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Human Molecular Genetics, 2002, Vol. 11, No. 24 3031-3038
© 2002 Oxford University Press

Two independent apolipoprotein A5 haplotypes influence human plasma triglyceride levels

Len A. Pennacchio1,*,{dagger}, Michael Olivier2,{dagger}, Jaroslav A. Hubacek3,{dagger}, Ronald M. Krauss1, Edward M. Rubin1 and Jonathan C. Cohen3

1Genome Sciences Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA, 2Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, WI, USA and 3Center for Human Nutrition and McDermott Center for Human Growth and Development, UT Southwestern Medical Center, Dallas, TX, USA

Received July 15, 2002; Accepted September 16, 2002

The recently identified apolipoprotein A5 gene (APOA5) has been shown to play an important role in determining plasma triglyceride concentrations in humans and mice. We previously identified an APOA5 haplotype (designated APOA5*2) that is present in ~16% of Caucasians and is associated with increased plasma triglyceride concentrations. In this report we describe another APOA5 haplotype (APOA5*3) containing the rare allele of the single nucleotide polymorphism c.56C>G that changes serine to tryptophan at codon 19 and is independently associated with high plasma triglyceride levels in three different populations. In a sample of 264 Caucasian men and women with plasma triglyceride concentrations above the 90th percentile or below the 10th percentile, the APOA5*3 haplotype was more than three-fold more common in the group with high plasma triglyceride levels. In a second independently ascertained sample of Caucasian men and women (n=419) who were studied while consuming their self-selected diets as well as after high-carbohydrate diets and high-fat diets, the APOA5*3 haplotype was associated with increased plasma triglyceride levels on all three dietary regimens. In a third population comprising 2660 randomly selected individuals, the APOA5*3 haplotype was found in 12% of Caucasians, 14% of African-Americans and 28% of Hispanics and was associated with increased plasma triglyceride levels in both men and women in each ethnic group. These findings establish that the APOA5 locus contributes significantly to inter-individual variation in plasma triglyceride levels in humans. Together, the APOA5*2 and APOA5*3 haplotypes are found in 25–50% of African-Americans, Hispanics and Caucasians and support the contribution of common human variation to quantitative phenotypes in the general population.

* To whom correspondence should be addressed at: Department of Genome Sciences, MS 84-171, One Cyclotron Road, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. Tel: +1 5104867498; Fax: +1 5104864229; Email: lapennacchio{at}lbl.gov.

{dagger} The authors wish it to be known that, in their opinion, these three authors should be considered as joint First Authors.


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