Skip Navigation

Human Molecular Genetics 2006 15(Review Issue 1):R17-R29; doi:10.1093/hmg/ddl046
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (PDF) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Mattick, J. S.
Right arrow Articles by Makunin, I. V.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Mattick, J. S.
Right arrow Articles by Makunin, I. V.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2006. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Non-coding RNA

John S. Mattick* and Igor V. Makunin

Australian Research Council Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, St Lucia, QLD 4072, Australia

* To whom correspondence should be addressed. Tel: +61 733462079; Fax: +61 733462111; Email: j.mattick{at}imb.uq.edu.au

Received February 13, 2006; Accepted February 22, 2006

The term non-coding RNA (ncRNA) is commonly employed for RNA that does not encode a protein, but this does not mean that such RNAs do not contain information nor have function. Although it has been generally assumed that most genetic information is transacted by proteins, recent evidence suggests that the majority of the genomes of mammals and other complex organisms is in fact transcribed into ncRNAs, many of which are alternatively spliced and/or processed into smaller products. These ncRNAs include microRNAs and snoRNAs (many if not most of which remain to be identified), as well as likely other classes of yet-to-be-discovered small regulatory RNAs, and tens of thousands of longer transcripts (including complex patterns of interlacing and overlapping sense and antisense transcripts), most of whose functions are unknown. These RNAs (including those derived from introns) appear to comprise a hidden layer of internal signals that control various levels of gene expression in physiology and development, including chromatin architecture/epigenetic memory, transcription, RNA splicing, editing, translation and turnover. RNA regulatory networks may determine most of our complex characteristics, play a significant role in disease and constitute an unexplored world of genetic variation both within and between species.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
J. Biol. Chem.Home page
Y. S. Brooks, G. Wang, Z. Yang, K. K. Smith, E. Bieberich, and L. Ko
Functional Pre- mRNA trans-Splicing of Coactivator CoAA and Corepressor RBM4 during Stem/Progenitor Cell Differentiation
J. Biol. Chem., July 3, 2009; 284(27): 18033 - 18046.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C.-E. Lai, M.-Y. Tsai, Y.-C. Liu, C.-W. Wang, K.-T. Chen, and C. L. Lu
FASTR3D: a fast and accurate search tool for similar RNA 3D structures
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W287 - W295.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
F. Ferri, H. Bouzinba-Segard, G. Velasco, F. Hube, and C. Francastel
Non-coding murine centromeric transcripts associate with and potentiate Aurora B kinase
Nucleic Acids Res., June 19, 2009; (2009) gkp529v1.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
K. Kikuchi, M. Fukuda, T. Ito, M. Inoue, T. Yokoi, S. Chiku, T. Mitsuyama, K. Asai, T. Hirose, and Y. Aizawa
Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation
Nucleic Acids Res., June 16, 2009; (2009) gkp426v1.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
V. A. Burzio, C. Villota, J. Villegas, E. Landerer, E. Boccardo, L. L. Villa, R. Martinez, C. Lopez, F. Gaete, V. Toro, et al.
Expression of a family of noncoding mitochondrial RNAs distinguishes normal from cancer cells
PNAS, June 9, 2009; 106(23): 9430 - 9434.
[Abstract] [Full Text] [PDF]


Home page
DevelopmentHome page
M. V. Koerner, F. M. Pauler, R. Huang, and D. P. Barlow
The function of non-coding RNAs in genomic imprinting
Development, June 1, 2009; 136(11): 1771 - 1783.
[Abstract] [Full Text] [PDF]


Home page
ReproductionHome page
D. C Wilkerson and K. D Sarge
RNA polymerase II interacts with the Hspa1b promoter in mouse epididymal spermatozoa
Reproduction, June 1, 2009; 137(6): 923 - 929.
[Abstract] [Full Text] [PDF]


Home page
Rheumatology (Oxford)Home page
Y. C. Lee, J. Cui, K. H. Costenbader, N. A. Shadick, M. E. Weinblatt, and E. W. Karlson
Investigation of candidate polymorphisms and disease activity in rheumatoid arthritis patients on methotrexate
Rheumatology, June 1, 2009; 48(6): 613 - 617.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
Y. C. Kim, Q. Wu, J. Chen, Z. Xuan, Y.-C. Jung, M. Q. Zhang, J. D. Rowley, and S. M. Wang
The transcriptome of human CD34+ hematopoietic stem-progenitor cells
PNAS, May 19, 2009; 106(20): 8278 - 8283.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
T. Akama, K. Suzuki, K. Tanigawa, A. Kawashima, H. Wu, N. Nakata, Y. Osana, Y. Sakakibara, and N. Ishii
Whole-Genome Tiling Array Analysis of Mycobacterium leprae RNA Reveals High Expression of Pseudogenes and Noncoding Regions
J. Bacteriol., May 15, 2009; 191(10): 3321 - 3327.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
W. E. Kowtoniuk, Y. Shen, J. M. Heemstra, I. Agarwal, and D. R. Liu
A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA
PNAS, May 12, 2009; 106(19): 7768 - 7773.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
B. P. Mello, E. F. Abrantes, C. H. Torres, A. Machado-Lima, R. d. S. Fonseca, D. M. Carraro, R. R. Brentani, L. F. L. Reis, and H. Brentani
No-match ORESTES explored as tumor markers
Nucleic Acids Res., May 1, 2009; 37(8): 2607 - 2617.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
P. G. Hawkins, S. Santoso, C. Adams, V. Anest, and K. V. Morris
Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells
Nucleic Acids Res., May 1, 2009; 37(9): 2984 - 2995.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
R. T. Brookheart, C. I. Michel, L. L. Listenberger, D. S. Ory, and J. E. Schaffer
The Non-coding RNA gadd7 Is a Regulator of Lipid-induced Oxidative and Endoplasmic Reticulum Stress
J. Biol. Chem., March 20, 2009; 284(12): 7446 - 7454.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C. P. Keating, M. K. Hill, D. J. Hawkes, R. P. Smyth, C. Isel, S.-Y. Le, A. C. Palmenberg, J. A. Marshall, R. Marquet, G. J. Nabel, et al.
The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA
Nucleic Acids Res., February 1, 2009; 37(3): 945 - 956.
[Abstract] [Full Text] [PDF]


Home page
Brief Funct Genomic ProteomicHome page
D. Tautz
Polycistronic peptide coding genes in eukaryotes--how widespread are they?
Brief Funct Genomic Proteomic, January 1, 2009; 8(1): 68 - 74.
[Abstract] [Full Text] [PDF]


Home page
NeuroscientistHome page
T. R. Mercer, M. E. Dinger, J. Mariani, K. S. Kosik, M. F. Mehler, and J. S. Mattick
Noncoding RNAs in Long-Term Memory Formation
Neuroscientist, October 1, 2008; 14(5): 434 - 445.
[Abstract] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
S. Hellwig and B. L. Bass
A starvation-induced noncoding RNA modulates expression of Dicer-regulated genes
PNAS, September 2, 2008; 105(35): 12897 - 12902.
[Abstract] [Full Text] [PDF]


Home page
Cardiovasc ResHome page
G. Condorelli and S. Dimmeler
MicroRNAs: components of an integrated system controlling cardiac development, physiology, and disease pathogenesis
Cardiovasc Res, September 1, 2008; 79(4): 551 - 552.
[Full Text] [PDF]


Home page
Genome ResHome page
Z. Lian, A. Karpikov, J. Lian, M. C. Mahajan, S. Hartman, M. Gerstein, M. Snyder, and S. M. Weissman
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation
Genome Res., August 1, 2008; 18(8): 1224 - 1237.
[Abstract] [Full Text] [PDF]


Home page
RNAHome page
M. Kim, B. Patel, K. E. Schroeder, A. Raza, and J. Dejong
Organization and transcriptional output of a novel mRNA-like piRNA gene (mpiR) located on mouse chromosome 10
RNA, June 1, 2008; 14(6): 1005 - 1011.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
F. Mohammad, R. R. Pandey, T. Nagano, L. Chakalova, T. Mondal, P. Fraser, and C. Kanduri
Kcnq1ot1/Lit1 Noncoding RNA Mediates Transcriptional Silencing by Targeting to the Perinucleolar Region
Mol. Cell. Biol., June 1, 2008; 28(11): 3713 - 3728.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Tsirigos and I. Rigoutsos
Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs
Nucleic Acids Res., June 1, 2008; 36(10): 3484 - 3493.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. P. Ohuchi, Y. Ikawa, and Y. Nakamura
Selection of a novel class of RNA-RNA interaction motifs based on the ligase ribozyme with defined modular architecture
Nucleic Acids Res., June 1, 2008; 36(11): 3600 - 3607.
[Abstract] [Full Text] [PDF]


Home page
Physiol. GenomicsHome page
M.-P. Gustin, C. Z. Paultre, J. Randon, G. Bricca, and C. Cerutti
Functional meta-analysis of double connectivity in gene coexpression networks in mammals
Physiol Genomics, June 1, 2008; 34(1): 34 - 41.
[Abstract] [Full Text] [PDF]


Home page
Physiol. GenomicsHome page
C. Zhang
MicroRNomics: a newly emerging approach for disease biology
Physiol Genomics, April 1, 2008; 33(2): 139 - 147.
[Abstract] [Full Text] [PDF]


Home page
Hum Mol GenetHome page
H. M. Broadbent, J. F. Peden, S. Lorkowski, A. Goel, H. Ongen, F. Green, R. Clarke, R. Collins, M. G. Franzosi, G. Tognoni, et al.
Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked SNPs in the ANRIL locus on chromosome 9p
Hum. Mol. Genet., March 15, 2008; 17(6): 806 - 814.
[Abstract] [Full Text] [PDF]


Home page
Hum Mol GenetHome page
D. S. Perez, T. R. Hoage, J. R. Pritchett, A. L. Ducharme-Smith, M. L. Halling, S. C. Ganapathiraju, P. S. Streng, and D. I. Smith
Long, abundantly expressed non-coding transcripts are altered in cancer
Hum. Mol. Genet., March 1, 2008; 17(5): 642 - 655.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
K. L. Jones, S. Sonza, and J. Mak
Primary T-lymphocytes rescue the replication of HIV-1 DIS RNA mutants in part by facilitating reverse transcription
Nucleic Acids Res., March 1, 2008; 36(5): 1578 - 1588.
[Abstract] [Full Text] [PDF]


Home page
Clin. Cancer Res.Home page
A. J. Lowery, N. Miller, R. E. McNeill, and M. J. Kerin
MicroRNAs as Prognostic Indicators and Therapeutic Targets: Potential Effect on Breast Cancer Management
Clin. Cancer Res., January 15, 2008; 14(2): 360 - 365.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. He, C. Liu, G. Skogerbo, H. Zhao, J. Wang, T. Liu, B. Bai, Y. Zhao, and R. Chen
NONCODE v2.0: decoding the non-coding
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D170 - D172.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
A. Siepel, M. Diekhans, B. Brejova, L. Langton, M. Stevens, C. L.G. Comstock, C. Davis, B. Ewing, S. Oommen, C. Lau, et al.
Targeted discovery of novel human exons by comparative genomics
Genome Res., December 1, 2007; 17(12): 1763 - 1773.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
J. S. Satterlee, S. Barbee, P. Jin, A. Krichevsky, S. Salama, G. Schratt, and D.-Y. Wu
Noncoding RNAs in the Brain
J. Neurosci., October 31, 2007; 27(44): 11856 - 11859.
[Abstract] [Full Text] [PDF]


Home page
J. Virol.Home page
G. Zhang, B. Raghavan, M. Kotur, J. Cheatham, D. Sedmak, C. Cook, J. Waldman, and J. Trgovcich
Antisense Transcription in the Human Cytomegalovirus Transcriptome
J. Virol., October 15, 2007; 81(20): 11267 - 11281.
[Abstract] [Full Text] [PDF]


Home page
Clin. Cancer Res.Home page
Y. Guan, W.-L. Kuo, J. L. Stilwell, H. Takano, A. V. Lapuk, J. Fridlyand, J.-H. Mao, M. Yu, M. A. Miller, J. L. Santos, et al.
Amplification of PVT1 Contributes to the Pathophysiology of Ovarian and Breast Cancer
Clin. Cancer Res., October 1, 2007; 13(19): 5745 - 5755.
[Abstract] [Full Text] [PDF]


Home page
HypertensionHome page
C. J. Busst, K. J. Scurrah, J. A. Ellis, and S. B. Harrap
Selective Genotyping Reveals Association Between the Epithelial Sodium Channel {gamma}-Subunit and Systolic Blood Pressure
Hypertension, October 1, 2007; 50(4): 672 - 678.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
B. Berkhout and K.-T. Jeang
RISCy Business: MicroRNAs, Pathogenesis, and Viruses
J. Biol. Chem., September 14, 2007; 282(37): 26641 - 26645.
[Full Text] [PDF]


Home page
Genome ResHome page
M. Pheasant and J. S. Mattick
Raising the estimate of functional human sequences
Genome Res., September 1, 2007; 17(9): 1245 - 1253.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
Y. Zhou, Y. Zhong, Y. Wang, X. Zhang, D. L. Batista, R. Gejman, P. J. Ansell, J. Zhao, C. Weng, and A. Klibanski
Activation of p53 by MEG3 Non-coding RNA
J. Biol. Chem., August 24, 2007; 282(34): 24731 - 24742.
[Abstract] [Full Text] [PDF]


Home page
J. Cell Sci.Home page
A. Mazo, J. W. Hodgson, S. Petruk, Y. Sedkov, and H. W. Brock
Transcriptional interference: an unexpected layer of complexity in gene regulation
J. Cell Sci., August 15, 2007; 120(16): 2755 - 2761.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
F. A. Derheimer, H. M. O'Hagan, H. M. Krueger, S. Hanasoge, M. T. Paulsen, and M. Ljungman
RPA and ATR link transcriptional stress to p53
PNAS, July 31, 2007; 104(31): 12778 - 12783.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
L. Kong, Y. Zhang, Z.-Q. Ye, X.-Q. Liu, S.-Q. Zhao, L. Wei, and G. Gao
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W345 - W349.
[Abstract] [Full Text] [PDF]


Home page
Physiol. Rev.Home page
M. F. Mehler and J. S. Mattick
Noncoding RNAs and RNA Editing in Brain Development, Functional Diversification, and Neurological Disease
Physiol Rev, July 1, 2007; 87(3): 799 - 823.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
K. Tsuritani, T. Irie, R. Yamashita, Y. Sakakibara, H. Wakaguri, A. Kanai, J. Mizushima-Sugano, S. Sugano, K. Nakai, and Y. Suzuki
Distinct class of putative "non-conserved" promoters in humans: Comparative studies of alternative promoters of human and mouse genes
Genome Res., July 1, 2007; 17(7): 1005 - 1014.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
T. R. Gingeras
Origin of phenotypes: Genes and transcripts
Genome Res., June 1, 2007; 17(6): 682 - 690.
[Abstract] [Full Text] [PDF]


Home page
RNAHome page
J. R. Hogg and K. Collins
RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation
RNA, June 1, 2007; 13(6): 868 - 880.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
N. Osato, Y. Suzuki, K. Ikeo, and T. Gojobori
Transcriptional Interferences in cis Natural Antisense Transcripts of Humans and Mice
Genetics, June 1, 2007; 176(2): 1299 - 1306.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
G. P. G. Grant and P. Z. Qin
A facile method for attaching nitroxide spin labels at the 5' terminus of nucleic acids
Nucleic Acids Res., May 21, 2007; (2007) gkm240v1.
[Abstract] [Full Text] [PDF]


Home page
J. Exp. Biol.Home page
P. Carninci
Constructing the landscape of the mammalian transcriptome
J. Exp. Biol., May 1, 2007; 210(9): 1497 - 1506.
[Abstract] [Full Text] [PDF]


Home page
J. Exp. Biol.Home page
J. S. Mattick
A new paradigm for developmental biology
J. Exp. Biol., May 1, 2007; 210(9): 1526 - 1547.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
Z. Jehan, S. Vallinayagam, S. Tiwari, S. Pradhan, L. Singh, A. Suresh, H. M. Reddy, Y.R. Ahuja, and R. A. Jesudasan
Novel noncoding RNA from human Y distal heterochromatic block (Yq12) generates testis-specific chimeric CDC2L2
Genome Res., April 1, 2007; 17(4): 433 - 440.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
K. Miyauchi, T. Ohara, and T. Suzuki
Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method
Nucleic Acids Res., February 28, 2007; 35(4): e24 - e24.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
K. C. Pang, S. Stephen, M. E. Dinger, P. G. Engstrom, B. Lenhard, and J. S. Mattick
RNAdb 2.0--an expanded database of mammalian non-coding RNAs
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D178 - D182.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
E. Puerta-Fernandez, J. E. Barrick, A. Roth, and R. R. Breaker
Identification of a large noncoding RNA in extremophilic eubacteria
PNAS, December 19, 2006; 103(51): 19490 - 19495.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
F. Miura, N. Kawaguchi, J. Sese, A. Toyoda, M. Hattori, S. Morishita, and T. Ito
A large-scale full-length cDNA analysis to explore the budding yeast transcriptome
PNAS, November 21, 2006; 103(47): 17846 - 17851.
[Abstract] [Full Text] [PDF]


Home page
J. Physiol.Home page
M. F. Mehler and J. S. Mattick
Non-coding RNAs in the nervous system
J. Physiol., September 1, 2006; 575(2): 333 - 341.
[Abstract] [Full Text] [PDF]



Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.