Human Molecular Genetics Advance Access originally published online on March 16, 2005
Human Molecular Genetics 2005 14(9):1161-1169; doi:10.1093/hmg/ddi128
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Evidence for effect of mutant PCSK9 on apolipoprotein B secretion as the cause of unusually severe dominant hypercholesterolaemia


1MRC Clinical Sciences Centre, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK and 2Department of Clinical Biochemistry, University Hospital, Aintree, Liverpool L9 7AL, UK
* To whom correspondence should be addressed. Tel: +44 2083832324; Fax: +44 2083832077; Email: anne.soutar{at}csc.mrc.ac.uk
Received January 11, 2005; Revised February 7, 2005; Accepted March 10, 2005
| ABSTRACT |
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Typically, autosomal dominant familial hypercholesterolaemia (FH) is caused by mutations in the low density lipoprotein (LDL) receptor or apolipoprotein B genes that result in defective clearance of plasma LDL by the liver, but a third gene (PCSK9), encoding a putative proprotein convertase, has recently been implicated. Two independent microarray studies support a role for PCSK9 in sterol metabolism and adenoviral-mediated over-expression of PCSK9 in mouse liver depletes hepatic LDL-receptor protein, but the mechanism by which dominant mutations cause human FH is unclear. We have identified the D374Y mutant of PCSK9 in three FH families of English origin; all 12 affected individuals have unusually severe hypercholesterolaemia and require more stringent treatment than typical FH patients, who are heterozygous for defects in the LDL receptor. We have stably expressed wild-type (WT) and variant PCSK9 in McArdle-7777 rat hepatoma cells and shown by confocal microscopy that all forms of PCSK9 co-localize with protein disulphide isomerase in the ER whether or not they can be autocleaved. Expression of the proposed pathogenic variants, but not of WT, S386A or F216L PCSK9, increases secretion of apolipoprotein B100-containing lipoproteins from the cells by 24-fold probably by reducing the degradation of nascent protein; no differences in LDL-receptor content were observed in cells expressing WT, S386A or F216L PCSK9 and only a small reduction in cells expressing the D374Y or S127R mutants. This suggests that the variants of PCSK9 found in FH influence the secretion of apoB-containing lipoproteins, providing an explanation for the marked increase in circulating LDL in heterozygous carriers.
| INTRODUCTION |
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Familial hypercholesterolaemia (FH) is an autosomal dominant disorder usually caused by mutations in the low density lipoprotein (LDL)-receptor gene (LDLR) that result in defective clearance of plasma LDL by the liver. Heterozygous FH occurs with a frequency of about 1/500 and is characterized by increased plasma LDL cholesterol that causes cholesterol deposition as tendon xanthomas and atheroma (1
Two independent linkage studies in single large families, one French (8
) and the other from Utah (9
), revealed a new locus for dominant hypercholesterolaemia on chromosome 1p32 and heterozygous missense variants in a candidate gene in this region have since been found, which co-segregate with hypercholesterolaemia in three out of 24 French families tested including the one in which linkage was first established (10
). The gene, proprotein convertase subtilisin/kexin9 (PCSK9), encodes a putative protease that has also been named neural apoptosis-regulated convertase (NARC-1) (11
); the variants found are predicted to result in single amino acid substitutions (S127R in two families and F216L in the third). Another variant (D374Y) of PCSK9 was subsequently found in the Utah family (12
) and this same variant has also been found in three Norwegian FH families (13
).
The PCSK9 gene product was first identified as a protein whose expression was increased in neuronal cells after injuries that induce apoptosis (14
). It is a member of the subtilisin-like proprotein convertase family of enzymes that are largely involved in the processing of inactive precursor proteins to the active product (15
); although its catalytic domain is similar to that of proteinase K, it appears to form a new family of such enzymes (11
,16
). Proprotein convertases are frequently synthesized as inactive precursors that catalyse autocleavage of an N-terminal prodomain to form an active enzyme, with the prodomain often functioning as an intracellular chaperone and/or inhibitor until the active enzyme reaches its site of action (17
). In keeping with this, PCSK9 expressed in heterologous cells in vitro has the ability to autocleave its own propeptide, but the role of its prodomain and the physiological substrates for its proteolytic activity remain unknown (11
,16
). In the rat, PCSK9 mRNA is found in liver and small intestine, more so in the ileum than in the jejunum, and to a lesser extent in lung, spleen, kidney, testis and thymus (11
).
Although the physiological function of PSCK9 is unknown, strong indirect support for its involvement in cholesterol homeostasis has come from two microarray analyses of gene expression in mice (18
,19
). These studies showed that PCSK9 mRNA levels in the liver were markedly reduced in mice fed with a cholesterol-rich diet and were increased several-fold in transgenic mice over-expressing sterol response element-binding proteins, transcription factors that regulate the expression of genes involved in cholesterol and fatty acid biosynthesis (20
); it has also been shown that cholesterol depletion of cultured human hepatocytes and HepG2 cells increases PCSK9 mRNA (21
). Adenovirus-mediated over-expression of wild-type (WT) PCSK9 in mice was reported to cause severe hypercholesterolaemia by reducing the amount of LDL-receptor protein, but not mRNA, in the liver (21
). This has subsequently been confirmed in a second study, in which over-expression of two naturally occurring mutant forms of PCSK9 was also found to reduce LDL-receptor protein content of the liver; an engineered mutant with a substitution in one of the catalytic triad had no effect suggesting that the catalytic activity of PCSK9 was involved (22
). From these observations, it was deduced that the protein may normally play a role in the regulation of the LDL receptor, but it is not easy to explain how or why dominant missense mutations in human subjects would produce the same effect as over-expression of the WT protein in mice. Furthermore, it has been suggested that over-expression of proprotein convertases may result in spurious activity and sheds little light on their true physiological function (23
). Thus, a different mechanism may underlie the hypercholesterolaemia in the patients. Indeed, measurement of lipoprotein turnover in two patients heterozygous for the S127R variant of PCSK9 has suggested that the disorder is associated mainly with overproduction of apolipoprotein B, especially of LDL (24
). PCSK9 mRNA is highly expressed in liver and intestine, major sites of lipid and lipoprotein synthesis in vivo. As discussed in two recent editorials, clearly much remains to be explained about the function and malfunction of PCSK9 (25
,26
).
In this study, we describe three families, comprising 12 affected individuals, in whom the D374Y variant of PCSK9 co-segregates with an unusually severe form of hypercholesterolaemia that is difficult to treat and is associated with very early-onset premature CHD. We have investigated whether PCSK9 is expressed in EpsteinBarr virus (EBV)-transformed lymphocytes and whether expression and regulation of the LDL receptor are affected in cells from these patients. We have also studied the processing and intracellular localization of normal and variant human PCSK9 proteins and their effect on apoB secretion in McArdle-RH7777 (McA) cells, a rat hepatoma cell line that has been used extensively to study the synthesis and secretion of apoB-containing lipoproteins (27
).
| RESULTS |
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Identification of genetic variants in PCSK9
DNA from a group of 25 patients attending the Hammersmith Hospital Lipid Clinic, with a clinical diagnosis of definite heterozygous FH based on the Simon Broome Register criteria (28
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Screening of additional FH patients
Because the D374Y variant has now been detected in Norway and the UK, as well as in a Utah family that is also likely to be of northern European origin, we wondered if it might be relatively common in the UK. However, screening of a further 110 heterozygous FH patients whose genotype had not previously been analysed in detail failed to reveal any further carriers. We also failed to detect any carriers of the S127R or F216L variant, which have been observed in French families.
Clinical characteristics of D374Y carriers
The clinical characteristics of the 12 carriers of the D374Y variant of PCSK9 are summarized in Table 1. In several respects, the clinical phenotype in these three families appears to be different from that of typical heterozygous FH patients attending the Hammersmith Hospital Lipid Clinic. For example, despite their relatively young age (mean age 21.2, range 257 years), the untreated mean plasma total cholesterol in the 12 carriers was significantly higher than that in 40 of our most severely affected FH patients with known LDLR mutations (mean age 51±9), selected for having either coronary artery disease (28
) or refractory hypercholesterolaemia (29
) (13.8±2.8 versus 10.8±1.6 mmol/l, P<0.002 in MannWhitney test). However, it should be noted that this comparison is based on a small number of individuals with this rare genetic disorder. In addition, in our experience, long-term follow-up of the patients with the D374Y variant of PCSK9 over 1229 years showed that improved control of their hypercholesterolaemia only became possible with the advent of the potent statins (e.g. atorvastatin or rosuvastatin), given at high doses and in combination with ezetimibe, a cholesterol absorption inhibitor (Table 1). Perhaps as a result of this, the affected individuals appear to be rather susceptible to premature coronary disease; for example, in two of the three families shown in Figure 1, affected women died of premature CAD aged 31 (II,2 in family 2) and 30 (II,2 in family 3). In a previous study, analysis of mortality in typical FH in the UK revealed only two deaths in 1190 person years in British women aged 2039 (2
). Although most of our patients were APOE3/4, which could explain some of their increased risk of CAD, one equally severely affected individual was APOE3/3 (Table 1).
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Regulation of LDL-receptor expression in lymphocytes from PCSK9 patients
Analysis of total RNA from EBV-transformed lymphocytes by RTPCR revealed that PCSK9 mRNA was present, but at a much lower level than that in rat hepatoma cells (McA) relative to 18S rRNA (Fig. 2A). There was no apparent difference in the level of PCSK9 mRNA expression in cells from normolipaemic controls and in cells from two different hypercholesterolaemic carriers of the D374Y variant in PCSK9.
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We next examined the regulation of LDL-receptor expression by immunoblotting of extracts of EBV lymphocytes with specific antibodies. In extracts of cells incubated with 10% serum, the level of LDL-receptor protein relative to the housekeeping protein
-tubulin was very low, but appeared to be similar in cells from normolipaemic controls and from patients who were heterozygous for D374Y in PCSK9; in contrast, cells from heterozygous FH patients with null mutations in the LDLR contained significantly less LDL-receptor protein (Fig. 2B). Pre-incubation of the cells with lipoprotein-deficient serum (LPDS) and compactin up-regulated LDL-receptor expression equally well (
5-fold) in control cells and in cells from D374Y carriers (Fig. 2C), suggesting that sterol-mediated SREPB-dependent regulation is intact in these cells. Thus, we have no evidence to suggest that expression or regulation of LDLR mRNA or protein in EBV lymphocytes from patients is influenced by the presence of the PCSK9 D374Y variant. However, the level of expression of PCSK9 in these cells is low and does not, of course, exclude that the variants may influence LDL-receptor expression in the liver.
Activity of human PCSK9 protein expressed in rat liver cells
To investigate whether known human variants of PCSK9 (S127R, F216L and D374Y) had autocatalytic activity, we expressed them in rat hepatoma cells in culture; in addition, we expressed a construct in which the serine residue in the proposed catalytic triad in the active site was substituted with alanine (S386A), which has been shown to abolish auto-cleavage when expressed in heterologous cells (16
).
Stable transfectants of McA cells expressing WT or mutant human PCSK9-myc were analysed for PCSK9 protein expression and for cleavage of the propeptide by immunoblotting with antibodies to myc. As shown in Figure 3B, bands of
73 and 60 kDa were observed in cells expressing WT PCSK9-myc; the larger band corresponds to the precursor form of PCSK9-myc formed after signal peptide cleavage (calculated MW=73.4 kDa), and the smaller band to processed PCSK9-myc (calculated MW=59.7 kDa). As expected, cells expressing S386A PCSK9-myc produced only the larger band, confirming that this protein failed to be processed. Of the three naturally occurring variants tested, only S127R showed reduced processing, in that only a trace of the smaller protein was visible on the blot; cells expressing F216L or D374Y PCSK9-myc contained the same proportion of 60 and 73 kDa proteins as cells expressing WT PCSK9. Thus, these mutations did not appear to interfere with normal processing. The total amount of PCSK9-myc was similar in extracts of cells expressing each variant, including WT, with the exception that cells expressing S127R contained slightly less; no bands were detected in cells transfected with vector alone. Similar results were obtained with independent clones of cells transfected with the same plasmids and with cells expressing FLAG-tagged rather than myc-tagged PCSK9.
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Incubation of cells with 35S-methionine confirmed previous observations (30
Confocal microscopy of McA cells transiently expressing WT PCSK9-myc and stained by immunofluorescence showed that the protein was found almost exclusively in the endoplasmic reticulum (ER) (Fig. 3D), as judged by its co-localization with protein disulphide isomerase (PDI), a resident ER protein (31
). Little, if any, WT PCSK9 appeared to be present in the Golgi, as PCSK9-myc was not co-localized with GM130, a cis-Golgi matrix protein (32
). When the variant forms of PCSK9-myc were expressed, no differences were observed in their localization compared with the WT protein (data not shown). Because at least 50% of the PCSK9 protein in cells expressing WT PCSK9-myc had been cleaved, it is apparent that cleavage of the prodomain does not necessarily result in transport of PCSK9 to the Golgi network. It also suggests that PCSK9 may function in the ER, although we cannot exclude that PCSK9 functions in another compartment under physiological conditions because over-expression may mask trace amounts of PCSK9 in those compartments.
Expression of the LDL receptor in rat liver cells expressing PCSK9
To investigate whether expression of normal or mutant forms of PCSK9 affected the expression of the LDL receptor in liver cells, total RNA was isolated from McA cells stably expressing the different variants of PCSK9-myc. No differences were observed between the amounts of LDLR mRNA in cells expressing any of the forms of PCSK9-myc (data not shown), but semi-quantitative immunoblotting of cells revealed that cells expressing the D374Y and S127R variants contained slightly less LDL-receptor protein than untransfected cells or cells expressing either the F216L or the S386A variant (Fig. 4A and B).
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Secretion of apoB-containing lipoproteins from rat liver cells expressing PCSK9
McA cells stably expressing approximately equal amounts of WT or mutant PCSK9-myc were pre-incubated for 18 h in medium containing 0.8 mM oleate complexed with bovine serum albumin to stimulate lipoprotein synthesis and secretion (27
| DISCUSSION |
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In this paper, we have described three unrelated families of English origin in which all 12 hypercholesterolaemic individuals carry one copy of the D374Y variant of PCSK9; the phenotype in these carriers appears to be severe in comparison with heterozygous FH patients attending the same Lipid Clinic whose disorder is caused by known LDLR mutations. Although this has not been reported previously, we note that two Norwegian female subjects aged 19 and 41 with the D374Y variant of PCSK9 gene also had very high total serum cholesterol levels (13
Our results on the expression of variants of PCSK9 in rat liver cells suggest that dominant mutations in PCSK9 can increase secretion of apoB-containing lipoproteins, thereby offering an explanation for at least some of the excess lipoproteins found in the circulation of heterozygous carriers. Interestingly, we found that F216L PCSK9, in two members of a single French family (10
), had no effect on apoB secretion, raising the possibility that this rare variant that involves the conservative substitution of one bulky hydrophobic residue for another may not in fact be pathogenic. The differences observed were not due to the insertion site of the construct as the same results were obtained with at least three independent clones.
Despite the fact that adenovirus-mediated over-expression of WT or mutant PCSK9 in mice has been shown to reduce hepatic LDL-receptor protein content to almost undetectable levels, we found no evidence for a reduction in LDL-receptor content of our stable cell lines expressing WT PCSK9, and only a slight reduction in cells expressing D374Y or S127R. This small reduction was unlikely to have accounted for the marked increase in apoB secretion from cells expressing mutant PCSK9, and this is supported by the observation of Benjannet et al. (30
) who showed that the expression of PCSK9 in LDLR/ mice increased their plasma cholesterol by the same amount as in mice in which the LDLR was intact. It is well known that apoB100 secretion can be regulated at multiple levels, including transcription, post-transcriptional mRNA editing, translation and translocation (reviewed in 33), but the rate of secretion is determined largely by intracellular degradation in which ubiquitin-dependent proteosomal degradation plays a major role (34
). Thus, it is possible that PCSK9 is normally involved in the apoB100 degradation pathway and that mutant forms somehow interfere with this pathway.
As yet, the mechanism by which D374Y and S127R PCSK9 influence apoB secretion is not clear. From this study, it does not appear to be related to lack of protease activity, at least as assessed by the ability of the proteins to undergo autocatalytic cleavage, because in our hands the propeptide of D374Y PCSK9 is cleaved to the same extent as WT PCSK9 both in McA cells (Fig. 3) and in HepG2 cells (data not shown), although S127R PCSK9 showed reduced cleavage. Others have reported that the D374Y mutant does not undergo autocleavage when expressed in HEK293 cells, but we have no explanation for this apparent discrepancy (30
).
Even though prodomain cleavage of D374Y and S127R mutants occurs, suggesting that they have retained catalytic activity, it is possible that the cleaved prodomain in WT PCSK9 inhibits inappropriate enzyme activity, as with other proprotein convertases (35
). If the mutant proteins are not protected in this way, they could have gained activity in an inappropriate site or against an inappropriate substrate protein or may have interfered with the activity of normal PCSK9 or another unrelated protease. Another possibility is that mature PCSK9 does not itself function as a protease, but has some other function, for example, as a chaperone protein through interaction with other proteins in the ER. In this study, we have shown that although it has no ER retention signal, both mature and processed PCSK9 are localized in the ER in rat hepatoma cells, suggesting that PCSK9 binds to other proteins. Finally, because PCSK9 is a serine protease related to yeast kexin and bacterial subtilisin, it is possible that PCSK9 is directly involved in the degradation of apoB100 in a non-proteasomal serine protease pathway in the ER (36
). However, we have failed to show a direct interaction between apoB and PCSK9 by co-immunoprecipitation. It is very unlikely that the D374Y and S127R mutants of PCSK9 increase apoB100 secretion by affecting apoB mRNA editing, because there was little or no effect on secretion of apoB48, whereas apoB100 secretion increased several-fold; furthermore, we could detect no differences in the steady state amount of apoB mRNA in cells expressing WT or variant PCSK9 compared with untransfected cells (data not shown), suggesting that the increase in apoB secretion is not due to increased apoB gene transcription. The mechanism by which PSCK9 increases apoB secretion is currently under investigation.
In conclusion, we have characterized three families with an unusually severe phenotype of dominant hypercholesterolaemia who are heterozygous for the D374Y mutant of PCSK9. Heterologous expression of this mutant form of PCSK9, but not WT PCSK9, resulted in increased secretion of apoB-containing lipoproteins from rat hepatoma cells. These preliminary results provide an insight into a possible role for PCSK9 in regulating intracellular apoB-containing lipoprotein production and an explanation for the marked increase in LDL found in the circulation of heterozygous carriers of some PCSK9 variants. However, it is clear that the physiological role of PCSK9 is unlikely to be explained fully on the basis of studies on its over-expression, either in vivo or in cultured cells, and will require further investigation, perhaps using conditional knockout/transgenic animal models. However, we hope that this study will shed some light on the function of PCSK9 and on the mechanism of how mutant PCSK9 causes hypercholesterolaemia.
| MATERIALS AND METHODS |
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Patients
The probands in this study were referred to the Hammersmith Hospital Lipid Clinic. Local Ethical Research Committee approval was obtained and all individuals gave informed written consent.
Sequence analysis of genomic DNA
Genomic DNA was isolated from whole blood and each exon of ARH and PCSK9 was amplified by PCR with specific primers (5
,10
) and subjected to automated nucleotide sequencing.
Cell culture
EBV-transformed lymphocyte cell lines were produced and maintained in culture as described (5
). McArdle RH7777 (McA) cells (ATCC designation CRL 1601) were obtained from the European Collection of Animal Cell Cultures (Porton Down, UK) and cultured in Dulbecco's modified Eagle's medium (DMEM) Glutamax medium supplemented with 10% (v/v) fetal calf serum and 10% horse serum (Invitrogen, Paisley, UK).
Cloning and expression of PCSK9
Human PCSK9 cDNA was amplified by RTPCR from HepG2 cell mRNA with the 3'primer encoding FLAG or myc fused to the C-terminal end of the PCSK9 coding sequence. The PCR product was cloned into pCDNA3 and its sequence verified by comparison with the published sequence (GenBank accession no. AX207686). Mutations were introduced by oligonucleotide-dependent mutagenesis (see Supplementary Material for details). Stable McA lines expressing PCSK9 variants were established by transfection with plasmids using Lipofectamine 2000 (Invitrogen) according to the manufacturer's instructions and selection with G418 (0.6 mg/ml).
Analysis of gene and protein expression
Total cellular RNA was isolated with RNA-Bee (Biogenesis Ltd, Poole, UK) and cDNA synthesized with AMV reverse transcriptase (Roche, Lewes, UK). For semi-quantitative RTPCR, PCSK9 cDNA (for primer sequences see Supplementary Material) and 18S cDNA (primers from Applied Biosytems, Warrington, UK) fragments were amplified by PCR.
The LDL-receptor protein content of cells was determined by semi-quantitative immunoblotting (3
). The cleavage and secretion of PCSK9 were determined by immunoblotting and/or immunoprecipitation of proteins from lysates and medium of McA cells transfected with plasmids containing PSCK9 cDNA, essentially as described by Naureckiene et al. (16
). The following dilutions of antibodies were used: rabbit anti-human LDL receptor (Insight Biotechnology Ltd, Wembley, UK), 1:3000; rabbit anti-rat LDLR (kindly provided by Dr G. Ness, University of South Florida, USA), 1:3000; mouse anti-
-tubulin (Sigma), 1:10 000; mouse/rabbit anti-myc (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), 1:3000; rabbit anti-mouse-HRP and goat anti-rabbit-HRP (DAKO Ltd, Ely, UK), 1:5000.
Measurement of apoB secretion
Cells were incubated in DMEM medium (Invitrogen) supplemented with 0.8 mM oleic acid conjugated to bovine serum albumin (Sigma) for 18 h. After pre-incubation in methionine- and cysteine-free DMEM (Invitrogen) supplemented with 0.6 mM oleic acid for 30 min, cells were then pulsed with 80 µCi/ml of [35S]-methionine/cysteine (530 Mbq/ml, Amersham BioSciences, Bucks, UK) for 30 min and chased for 3 h in fresh DMEM supplemented with 10 mM each of unlabelled methionine and cysteine and 0.6 mM oleic acid. Secreted apoB was immunoprecipitated from the medium with goat anti-apoB antibody (Chemicon International Ltd, Harrow, UK) as described (37
).
Confocal microscopy
Cells were labelled with fluorescent antibodies and visualized by confocal microscopy essentially as described previously (38
). In brief, cells on coverslips were fixed and permeabilized in cold methanol for 3 min, blocked in phosphate-buffered saline (PBS) containing 2% (w/v) fish skin gelatin (Sigma) and then incubated sequentially with rabbit anti-myc, anti-PDI or goat anti-GM130 antibodies (Santa Cruz Biotechnology Inc.), and then with Alexa 488/568 conjugated donkey anti-rabbit or goat secondary antibodies (Molecular Probes Europe BV, Leiden, The Netherlands).
| SUPPLEMENTARY MATERIAL |
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Supplementary Material is available at HMG Online.
| ACKNOWLEDGEMENTS |
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We are indebted to the patients and their families for their willing cooperation in this study and to Dr Charles van Heyningen from University Hospital, Aintree, Liverpool for facilitating access to some of his patients. The anti-rat LDL-receptor antibody was kindly provided by Dr G. Ness, University of South Florida, USA. This study was funded in part by a grant from the British Heart Foundation (PG/03/020/15126) and by the Medical Research Council (UK).
| FOOTNOTES |
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The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors. | REFERENCES |
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chol), but precise values were not known; Single dagger denotes fatal myocardial infarction (MI).










