Human Molecular Genetics Advance Access originally published online on March 14, 2006
Human Molecular Genetics 2006 15(8):1343-1353; doi:10.1093/hmg/ddl054
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Published by Oxford University Press 2006
SPG3A protein atlastin-1 is enriched in growth cones and promotes axon elongation during neuronal development
1Cellular Neurology Unit and 2Electron Microscopy Facility, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA
* To whom correspondence should be addressed at: Cellular Neurology Unit, NINDS, National Institutes of Health, Building 35, Room 2C-913, 35 Convent Drive, Bethesda, MD 20892-3704, USA. Tel: +1 3014519680; Fax: +1 3014804888; Email: blackstc{at}ninds.nih.gov
Received January 12, 2006; Accepted March 7, 2006
| ABSTRACT |
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The hereditary spastic paraplegias (HSPs) (SPG1-29) comprise a group of inherited neurological disorders characterized principally by spastic lower extremity weakness due to a length-dependent, retrograde axonopathy of corticospinal motor neurons. Mutations in the gene encoding the dynamin superfamily member atlastin-1, an oligomeric GTPase highly localized to the Golgi apparatus in the adult brain, are responsible for SPG3A, a common autosomal dominant HSP. A distinguishing feature of SPG3A is its frequent early onset, raising the possibility that developmental abnormalities may be involved in its pathogenesis. Here, we demonstrate that several missense SPG3A mutant atlastin-1 proteins have impaired GTPase activity and thus may act in a dominant-negative, loss-of-function manner by forming mixed oligomers with wild-type atlastin-1. Using confocal and electron microscopies, we have also found that atlastin-1 is highly enriched in vesicular structures within axonal growth cones and varicosities as well as at axonal branch points in cultured cerebral cortical neurons, prefiguring a functional role for atlastin-1 in axonal development. Indeed, knock-down of atlastin-1 expression in these neurons using small hairpin RNAs reduces the number of neuronal processes and impairs axon formation and elongation during development. Thus, the long axonopathy in early-onset SPG3A may result from abnormal development of axons because of loss of atlastin-1 function.
| INTRODUCTION |
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The hereditary spastic paraplegias (HSPs) constitute a clinically and genetically diverse cluster of inherited neurological disorders in which the primary manifestations are progressive spasticity and weakness of the lower limbs due to a length-dependent, retrograde axonopathy of the upper motor neurons in the cerebral cortex (1
The identification over the past several years of >25 genetic loci and 11 gene products for the HSPs has yielded new insights into their pathogenesis (1
4
). Indeed, causative mutations have been identified in proteins within several broad functional categories: mitochondrial function, axonal development, intracellular trafficking and transport and myelination. Among these categories, the largest number of identified gene products appears generally related to protein or membrane trafficking, although, in many cases, direct evidence is lacking (1
4
).
The autosomal dominant HSP SPG3A is the second most common HSP and is caused by more than 20 different mutations, predominantly missense mutations, in the atlastin-1 gene (6
,7
) (Supplementary Material, Fig. S1). On the basis of some sequence similarity to proteins in the dynamin superfamily of large GTPases (6
,8
), atlastin-1 has been implicated in intracellular membrane trafficking. However, although the atlastin-1 GTPase is known to be an oligomeric GTPase highly localized to the Golgi apparatus in the adult brain (9
), the effects of SPG3A mutations on atlastin-1 structure and activity are not known, nor are their effects on neuronal function within the central nervous system. Here, we report that several common atlastin-1 mutations impair atlastin-1 GTPase activity. Furthermore, in addition to its localization to the Golgi apparatus, atlastin-1 is also highly enriched in axonal growth cones and varicosities during central nervous system development, and loss of atlastin-1 inhibits the growth of axons. These findings are consistent with a neurodevelopmental etiology for the very early-onset SPG3A form of HSP.
| RESULTS |
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SPG3A mutations impair atlastin-1 GTPase activity but not oligomerization
To understand better the molecular pathogenesis of autosomal dominant SPG3A, we investigated several different known SPG3A missense mutations for their effects on atlastin-1 homo-oligomerization and GTPase activity (9
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We considered the possibility that SPG3A mutations might affect atlastin-1 GTPase activity and, subsequently, that these mutant atlastin-1 proteins might functionally impair the atlastin-1 oligomer by binding to wild-type atlastin-1 proteins and reducing overall complex GTPase activity in a dominant-negative manner. In one identified SPG3A missense mutation, R217Q, the involved residue is within the highly conserved tripartite GTP binding site (10
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Atlastin-1 is enriched in axonal growth cones during development
Abnormalities in central nervous system development have been proposed for SPG3A because of its often very early onset as well as its slow progression and, in some cases, lack of apparent progression (2
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We examined the localization of atlastin-1 in developing rat cortical neurons in primary culture using confocal immunofluorescence microscopy (Fig. 5). Interestingly, atlastin-1 was highly enriched not only in Golgi apparatus but also in axonal growth cones and growth cone-like varicosities, or waves (16
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We investigated the localization of atlastin-1 in growth cones and varicosities in more detail using co-localization studies with proteins such as GAP-43, which is known to be present in axonal varicosities as well as in growth cones (16
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Using electron microscopy, we probed further the subcellular localization of atlastin-1 in cultured neurons. As reported previously (9
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Atlastin-1 knock-down in neurons inhibits axon growth
Over-expression of epitope-tagged wild-type atlastin-1 and various SPG3A mutant forms of atlastin-1 resulted in extensive distribution throughout the ER network, in contrast to the predominant localization of the endogenous protein to the Golgi apparatus (data not shown). Thus, to model SPG3A in cultured cortical neurons, we knocked down expression of atlastin-1 using small hairpin RNAs (shRNAs). We utilized a vector, pG-SUPER, that expresses both the shRNA and GFP, which can be used to identify knock-down cells using fluorescent microscopy (18
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We next assessed the role of atlastin-1 in axonal development using these shRNA techniques (Fig. 9). In cultured cortical neurons in which atlastin-1 expression was suppressed, there was a much greater percentage of neurons lacking axons at DIV6 when compared with neurons transfected with the control pG-SUPER vector (Fig. 9A, B and D). In those cells with axons, the axons in the atlastin-1 shRNA expressing cells were significantly shorter when compared with those in control pG-SUPER-transfected cells (Fig. 9A, B and C). In particular, the number of neurons with long axons (>500 µm) was markedly reduced in the atlastin-1 shRNA (one out of 49) versus control (eight out of 43) transfections. Lastly, the number of primary dendrites was also modestly but consistently reduced in the shRNA-transfected neurons when compared with the controls (Fig. 9E).
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| DISCUSSION |
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In this study, we have demonstrated that several SPG3A mutant forms of atlastin-1 have impaired GTPase activity while retaining the ability to form oligomeric complexes. We propose that a net loss of overall GTPase activity of the atlastin-1 oligomer is likely due to the fact that SPG3A mutant atlastin-1 proteins can form mixed homo-oligomers with the wild-type protein in a dominant-negative fashion. Such a mechanism is highly reminiscent of that suggested for neurological disorders due to mutations in other members of the dynamin superfamily such as OPA1 (optic atrophy type 1) (19
Many studies have noted that SPG3A is among the most early-onset forms of HSP and that it is also slowly progressive or even non-progressive in some cases, giving rise to suggestions that it may be a developmental disorder (2
,7
,11
15
). Furthermore, a recent MRI study noted that patients with SPG3A had less severe atrophy in spite of worse clinical features than patients with other pure HSPs such as SPG6 and SPG8, again supporting alternative mechanisms that do not rely solely on axonal degeneration (26
). Our findings of atlastin-1 localization within growth cones and the effects of its loss on axonal growth provide important insights into the function of atlastin-1 during development and are highly consistent with many published clinical studies, particularly those emphasizing the early onset and often lack of apparent progression of SPG3A (2
).
Although atlastin-1 is critical for the formation and elongation of axons during development, the molecular mechanisms involved remain unclear. On the basis of its localization in the neuronal soma, atlastin-1 seems likely to be involved in ERGolgi membrane trafficking, perhaps in membrane fusion events based on its topological similarities to two other dynamin superfamily members, the mitofusins Mfn1 and Mfn2 (27
), which mediate mitochondrial fusion. However, the localization of atlastin-1 within growth cones diverges markedly from those of markers of both the ER and the Golgi apparatus, indicating that atlastin-1 also has functions in another membrane compartment during axonal development. A particularly intriguing finding of our study is that atlastin-1 appears to have two strikingly different localizations within growth cones. In some cases, it is condensed within the C-domain, and in others, it is present more peripherally in the P-domain (Fig. 6A). The most likely explanation for these differences is that atlastin-1 undergoes dynamic changes in localization that are related to the growth or pathfinding of the axon during development. As the arrival of an axonal varicosity, or wave, at a growth cone correlates closely with the onset of a growth phase (17
), an attractive molecular mechanism for atlastin-1 function in axonal elongation would be the regulation of membrane dynamics within the growth cone, because membrane expansion, in concert with cytoskeletal dynamics, is an important mediator of axon elongation (28
31
). Live imaging studies should help to uncover how changes in the axonal localization of atlastin-1 correlate with the dynamic changes occurring in growth cones during axonal development.
Interestingly, a recent study has identified an interaction of atlastin-1 with spastin (32
), a microtubule-severing ATPase that is mutated in the most common form of autosomal dominant HSP, SPG4 (33
36
), indicating that these HSP proteins may be involved in a common cellular pathway (32
). In fact, spastin is also enriched in the growth cones and branch points of neurites in the NSC34 neuron-like cell line (37
), highly reminiscent of the localization of atlastin-1 that we report here in cultured neurons. As destabilized microtubules are commonly found in growth cones and at axonal branch points (38
), it will be important to determine whether the microtubule-severing protein spastin is co-localized with atlastin-1 in these areas during neuronal development and whether they interact in vivo. If so, spastin may function with atlastin-1 in membrane trafficking events in addition to its known effects on microtubule dynamics.
In summary, we have shown that atlastin-1 mutations result in a net loss of function of the atlastin-1 GTPase and that impairment in atlastin-1 function in neurons gives rise to abnormalities of axonal development, which are likely highly relevant to the pathogenesis of SPG3A HSP, with its characteristic features of early onset along with slow progression or even lack of progression. Studies examining the effects of atlastin-1 on membrane expansion at the growth cone as well as in ERGolgi trafficking will be necessary to further understand the diverse functional roles of atlastin-1 within neurons.
| MATERIALS AND METHODS |
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DNA constructs
pGAD10-, pBHA- and pCAL-n-EK-atlastin-1 yeast two-hybrid and bacterial fusion protein constructs as well HA- and Myc-tagged atlastin-1 eukaryotic expression constructs have been described previously (9
An oligoduplex shRNA based on nucleotides 11381156 of rat atlastin-1 (GenBank accession no. AY581896) was created by annealing the following primers: 5'-gatccccCCGAGAGCCTAGATATTAAttcaagagaTTAATATCTAGGCTCTCGGttttt-3' and 5'-agctaaaaaCCGAGAGCCTAGATATTAAtctcttgaaTTAATATCTAGGCTCTCGGggg-3'. This oligoduplex DNA was then directionally cloned into the BglII and HindIII restriction sites of the pG-SUPER vector (18
).
Atlastin-1 interaction studies
Yeast two-hybrid tests were performed using the L40 yeast strain, harboring the reporter genes HIS3 and ß-galactosidase under the control of upstream LexA binding sites as described previously (9
,39
,40
). Co-IP studies, membrane fractionation and FPLC gel-exclusion chromatography were performed as described in Zhu et al. (9
,39
). For chemical cross-linking studies, COS-7 cells over-expressing wild-type atlastin-1 or SPG3A mutants were washed twice with phosphate-buffered saline (PBS) and lysed; the post-nuclear supernatant was then incubated with 0.7 mM BS3 (Pierce) in PBS for 2 h on ice. After the reactions were quenched with 1 M TrisHCl buffer (pH 7.5), proteins were resolved by SDSPAGE (6% acrylamide gels) and immunoblotted with anti-Myc antibodies as described previously (9
).
Tissue preparation and cell fractionation
Brains from adult (150200 g), post-natal day 8 (P8) and E18 SpragueDawley rats were homogenized in PBS with 0.5% Triton X-100 and protease inhibitor cocktail (Sigma-Aldrich). After centrifugation (20 min, 55 000g, 4°C), the supernatants were resolved on 10% SDSPAGE gels and immunoblotted with antibodies against atlastin-1 (1.4 µg/ml) (9
), p115 (mouse monoclonal clone 15, IgG1; BD Biosciences Pharmingen; 1:2000), KDEL (mouse monoclonal 10C3, IgG2a; Stressgen Biotech; 1:1500), actin (mouse monoclonal AC-40, IgG2a; Sigma-Aldrich; 1:2000) or synaptophysin (rabbit polyclonal; Santa Cruz; 1:2000) as described previously (9
). Immunoblots were scanned using a DuoScan T2500 scanner (Agfa), and protein levels were then quantitatively analyzed using ImageQuant5.1 (Molecular Dynamics).
Neurons in primary culture (DIV6) were collected in ice-cold buffer A [25 mM MES (pH 7.2) and 2 mM EDTA] with protease inhibitor cocktail, homogenized with a glass-Teflon homogenizer and centrifuged for (5 min, 1000g, 4°C). The supernatant was brought to a final concentration of 0.4 M sucrose before being overlaid onto a continuous 0.41.7 M sucrose gradient prepared in buffer A. After centrifugation in a Beckman SW50 rotor (12 h, 200 000g, 4°C), 12 fractions were collected. Samples were concentrated by methanol precipitation and resuspended in SDSPAGE loading buffer, resolved by SDSPAGE and immunoblotted with anti-KDEL, anti-atlastin-1 and anti-p115 antibodies as described earlier.
GTPase activity assays
Wild-type and SPG3A mutant CBP-atlastin-1 fusion proteins were prepared and purified, and the GTPase activity assays were performed using 0.2 µg protein/reaction as described previously (9
,39
). Data were compared using Student's t-test, and differences were considered to be significant if P<0.05.
Neuronal cultures, transfections and immunocytochemistry
All animal experiments were approved by the NINDS/NIDCD Animal Care and Use Committee. Primary cultures of rat cerebral cortical neurons were prepared from E18 embryos, plated at a density of
2.6x104/cm2 on cover slips and maintained as described previously (41
). At DIV6, neurons were fixed with paraformaldehyde, immunostained with primary and Alexa Fluor 488 and 568 secondary antibodies (Molecular Probes), mounted and imaged using a Zeiss LSM510 laser-scanning confocal microscope as described previously (9
). Primary antibodies against the following proteins were used: atlastin-1 (no. 5409; 7 µg/ml) (9
); p115 (mouse monoclonal clone 15, IgG1; BD Biosciences Pharmingen; 1:500 dilution); KDEL (mouse monoclonal 10C3, IgG2a; Stressgen Biotech; 1:200 dilution); GAP-43 (mouse monoclonal clone GAP-7B10, IgG2a; Sigma-Aldrich; 1:500 dilution); clathrin heavy chain (mouse monoclonal clone X22, IgG1; Affinity BioReagents; 1:500 dilution);
-adaptin (AP-2; mouse monoclonal clone AP6, IgG1; Affinity BioReagents; 1:500 dilution).
For shRNA-mediated knock-down of atlastin-1, rat cerebral cortical neurons were transfected with pG-SUPER or pG-SUPER atlastin-1 shRNA immediately after dissociation by electroporation (Amaxa Nucleofector I); cells were then plated at
1.3x104/cm2 onto cover slips precoated with poly-L-lysine. At DIV6, neurons were fixed for 30 min with 4% formaldehyde and then blocked with 5% normal goat serum and 0.2% saponin in PBS for 30 min. Primary antibodies diluted in PBS with 5% normal goat serum and 0.05% saponin were incubated with the cover slips overnight at 4°C, and then Alexa Fluor secondary antibodies (Molecular Probes; 1:1000) diluted in the same medium were applied for 1 h at 25°C. Axons were stained with anti-tau-1 antibody (mouse monoclonal PC1C6, IgG2a; Chemicon; 1:500 dilution), followed by Alexa Fluor 568 conjugated goat anti-mouse IgG2a antibody. Dendrites were stained with antibody against MAP2 (mouse monoclonal HM-2, IgG1; Sigma-Aldrich, 1:500 dilution), followed by Alexa Fluor 350 conjugated goat anti-mouse IgG1 secondary antibodies. Atlastin-1 protein levels were monitored using rabbit polyclonal anti-atlastin-1 antibodies (9
), followed by Alexa Fluor 633 conjugated goat anti-rabbit IgG secondary antibodies. Fluorescent images were acquired using a Zeiss LSM510 NLO laser-scanning confocal microscope with a Mira-Verdi laser system for multiphoton excitation. Alexa Fluor 488 was excited with
=488 nm illumination; Alexa Fluor 568 with
=543 nm; Alexa Fluor 633 with
=633 nm; Alexa Fluor 350 with
=730 nm (two photon excitation). Measurements of axon length were performed using ImageJ software (NIH), and statistical analyses were performed using Student's t-test and K2-test.
Immunogold electron microscopy
Rat hippocampal and cerebral cortical neuron cultures were prepared and maintained as described previously (41
,42
). After 34 weeks (for hippocampal neurons) or 6 days (for cortical neurons) in culture, the neurons were fixed with 4% paraformaldehyde or else 2% paraformaldehyde and 0.1% glutaraldehyde in 0.1 M phosphate buffer (pH 7.4) for 30 min. After washing with 0.1 M phosphate buffer, cells were permeabilized and blocked with 5% normal goat serum and 0.1% saponin in PBS for 1 h. Rabbit polyclonal anti-atlastin-1 (no. 5409; 14 µg/ml) or anti-synaptophysin (DAKA; 1:250 dilution) antibodies were then added in blocking buffer for 1 h; in control experiments, the primary antibody was omitted. After washing with 1% normal goat serum in PBS and 2% non-fat milk in PBS, cells were incubated with 1.4 nm Nanogold gold-conjugated anti-rabbit secondary antibodies (1:250 dilution; Nanoprobes) in 2% non-fat milk in PBS for 1 h. After washing with 2% non-fat milk in PBS, cells were then fixed with 2% glutaraldehyde in PBS for 30 min. Cells were thoroughly washed with PBS and distilled water, silver-enhanced using the HQ silver kit (Nanoprobes) and washed again with water and 0.1 M phosphate buffer. The fixed cells were then treated with 0.2% OsO4 in 0.1 M phosphate buffer for 30 min, mordanted en bloc with 0.25% uranyl acetate in acetate buffer (pH 5.0) overnight, washed and dehydrated with serial concentrations of ethanol and finally infiltrated and embedded in epoxy resins. Thin sections of
70 nm were counterstained with uranyl acetate and lead citrate and examined under a Jeol 1200 EXII transmission electron microscope. Digital images were acquired using an XR-100 CCD camera (Advanced Microscopy Techniques) and processed with Adobe Photoshop software.
For immunogold labeling of adult rat brain sections, adult SpragueDawley rats (150200 g) were perfused with 4% paraformaldehyde and 100 µm sections were prepared. Immunogold staining and electron microscopy were then performed as described previously for the cultured neurons.
Protein content determination
Protein concentrations were assayed using the bicinchoninic acid assay kit (Pierce), with bovine serum albumin as the standard.
| SUPPLEMENTARY MATERIAL |
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Supplementary Material is available at HMG Online.
| ACKNOWLEDGEMENTS |
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We thank Drs G. Borisy and S. Kojima for providing the pG-SUPER plasmid, Dr C.L. Smith (NINDS Light Imaging Facility) for assistance with confocal microscopy, C. Winters for providing mature rat hippocampal neuron cultures and J. Nagle and D. Kaufmann (NINDS DNA Sequencing Facility) for DNA sequencing. This work was supported by the Intramural Research Program of the National Institute of Neurological Disorders and Stroke, National Institutes of Health.
Conflict of Interest statement. None declared.
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