| Human Molecular Genetics | Pages |
Distortion of allelic expression of apolipoprotein E in Alzheimer's disease
Introduction
Results
Discussion
Materials And Methods
RNA extraction
RT-PCR amplification of APOE mRNAs
Electrophoresis
Silver staining
Allele quantitation
References
Distortion of allelic expression of apolipoprotein E in Alzheimer's disease
INTRODUCTION
The [epsis]4 allele of the APOE gene is a major risk factor for late-onset Alzheimer's disease (LOAD) (
There has been little examination of the mRNA expression of APOE in AD (
We hypothesised that, since [epsis]4 homozygotes have a higher risk of developing disease than [epsis]3[epsis]4 heterozygotes, and a high proportion of individuals with the latter genotype reach a greater age without developing AD, a likely explanation of this was that there was genetic variability in neural expression at the APOE locus and that [epsis]3[epsis]4 heterozygote individuals who were high [epsis]4 expressors and/or low [epsis]3 expressors were more likely to develop AD than individuals with high [epsis]3 expressors and/or low [epsis]4 expressors.
The identification of the APOE allele transcription products is easily achieved by RT-PCR, using restriction fragment length polymorphism. We developed a semi-quantitative assay to measure allelic expression of APOE mRNA by RT-PCR using silver staining (
RESULTS
We selected a series of [epsis]3[epsis]4, [epsis]2[epsis]4, [epsis]2[epsis]3 AD cases (n = 14) and controls (n = 12) in order to measure the relative level of expression of the APOE allele in the frontal cortex (Fig.
Figure
Figure
DISCUSSION
It is important to note that measurement of the ratio of expression of the two alleles in heterozygotes is likely to be a much more robust measurement than the determination of absolute levels of mRNA expression in the same tissue, since the latter will be profoundly affected by post-mortem delay, agonal state and cell population and density.
As can be seen in Figure
To date, it seems difficult to link APOE mRNA and apoE protein levels. Several studies had explored this issue reporting contradictory findings in brain (
There are two major findings in our work. First, that the expression of the [epsis]3 allele is consistently higher than the expression of the [epsis]4 allele. Second, that the expression of the [epsis]4 allele beyond a certain level seems to greatly influence the vulnerability of an individual to Alzheimer's disease.
It is interesting to note that APOE is up-regulated as a consequence of an insult. Poirier et al. showed an increase in the level of expression of APOE mRNA in rat after lesioning of the cerebral cortex (
Interestingly, Templeton reached a similar conclusion using a cladistic analysis of our previously reported genetic data (
MATERIALS AND METHODS
RNA extraction
Fourteen late-onset AD cases of Caucasian origin with a mean age of 74.1 ± 11.8 years (five male and nine female) and 12 controls with a mean age of 83.0 ± 10.6 years (five male and seven female) were selected as a function of their APOE genotype (
Total RNA extraction was performed from frontal lobe samples as described by Gilmour et al. (
RT-PCR amplification of APOE mRNAs
The RT reaction was performed for 1 h 30 min at 37°C, using the F4 primer 5[prime]-ACAGAATTCGCCCCGGCCTGGTA-3[prime] at 50 pmol and 1 [mu]g of total RNA as template for the M-MLV reverse transcriptase following the conditions described by the supplier (Gibco/BRL). The PCR step was carried out with the F6 primer 5[prime]-TAAGCTTGGCACGGCTGTCCAAGGA-3[prime] at 50 pmol in a final volume of 10 [mu]l, for 30 cycles (1 min at 94°C, 1 min at 58°C and 1 min at 72°C each cycle) to remain in the linear range of the reaction. Briefly, PCR was performed in a total volume of 25 [mu]l containing 1.25 U Taq DNA polymerase, 0.2 mM of each dNTP, 4 mM of DTT, 0.1 mM of MgCl2, 0.04% of Triton X-100, 10% (v/v) of glycerol using the whole RT reaction as template.
Electrophoresis
RT-PCR DNA was then digested by 12 U CfoI endonuclease (Promega), DNA fragments were resolved on an 8% polyacrylamide gel (acrylamide:bisacrylamide 19:1), over 4 h at 12 V/cm. A range from 6 to 0.2 [mu]l of the RT-PCR product was loaded.
Silver staining
The gel was fixed over 90 min in 10% (v/v) ethanol, 0.5% (v/v) acetic acid. After two washings with deionised water, the gel was placed in silver nitrate solution (1 mg/ml) for 25 min. The gel was then washed twice with deionised water. The DNA polymorphism fragments were stained for 30 min in 0.037 % formaldehyde (v/v), hydroxyde nitrate (15 mg/ml). Finally, the reaction was stopped in a sodium carbonate solution (15 mg/ml). The developer and silver nitrate solutions were prepared extemporaneously. The gel was digitalised on a Sharp JX-325 high resolution colour scanner, and the fragment intensity was measured using the Image Master Software (Pharmacia) with appropriate background subtract.
Allele quantitation
The percentage of the [epsis]4 allele was calculated with the equation below as described in ref.
No[epsis]4 mRNA and No[epsis]3 mRNA were the initial number of the [epsis]3 and [epsis]4 mRNAs. [alpha][prime][epsis]4 mRNA and [alpha][prime][epsis]2 or [epsis]3 mRNA were the coefficients allowing silver staining, and the phenomenon of saturation due to this staining, to be integrated and normalised. A is a coefficient of proportionality, correcting for the length difference between each restriction fragments. After digestion by CfoI, the [epsis]3, [epsis]2 and [epsis]4 alleles can be characterised by 91, 83 and 72 bp fragments, respectively. The A coefficient is therefore calculated as A = 91/72 for [epsis]3[epsis]4 individuals, A = 83/72 for [epsis]2[epsis]4 individuals and A = 91/83 for the [epsis]2[epsis]3 population.

Because both [epsis]2 and [epsis]3 alleles give a restriction length fragment at 91 bp, AOD[epsis]2 mRNA + OD[epsis]3 mRNA = OD91 bp.
The initial [epsis]2 allele percentage in the [epsis]2[epsis]3 population was calculated as:
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Details of the calculations and modelling of the method are described in ref.
Linear regressions (necessary to perform ratio percentage) and Mann-Whitney U-test were performed using SAS software release 6.04 (SAS Institute Inc., Cary, NC, USA).
REFERENCES
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Copyright
Oxford University Press, 1997
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