| Human Molecular Genetics | Pages |
Prelingual deafness: high prevalence of a 30delG mutation in the connexin 26 gene
Introduction
Results
Mutations in consanguineous Tunisian and Lebanese DFNB1 families
Mutations in small non-consanguineous New Zealand and Australian families consistent with DFNB1 linkage
Mutations in small families uncharacterised for DFNB1 linkage, living in France, New Zealand and the UK
Analysis of control individuals
Discussion
Materials And Methods
Patients
Amplification of the coding exon of Cx26
DNA sequencing
Acknowledgements
References
Prelingual deafness: high prevalence of a 30delG mutation in the connexin 26 gene
INTRODUCTION
Profound or severe prelingual deafness affects one child in a thousand in developed countries (
A majority of the families attending genetic counselling clinics consist of normal hearing parents with a single deaf child who wish to know the probability of recurrence of the condition. In most cases, given the important role of environmental causes of prelingual deafness, it is not possible even to recognize whether the hearing loss is of genetic origin. Genetic counselling in such families would be greatly improved by an ability to detect DFNB mutations. In this respect, the high degree of genetic heterogeneity of the condition represents a major obstacle.
After the initial identification of the DFNB1 locus on 13q11 in a large consanguineous Tunisian family (
RESULTS
Mutations in consanguineous Tunisian and Lebanese DFNB1 families
In these families the involvement of the DFNB1 locus could be demonstrated by linkage analysis. In four of the five families from Tunisia (S15, S19, 20 and 60), and in the Lebanese family (LH), the same mutation was detected in all affected children on both Cx26 alleles, namely, a deletion of a guanosine (G) in a sequence of six G extending from position 30 to 35 (position 1 being the first base of the initiator codon) (Table
Mutations in small non-consanguineous New Zealand and Australian families consistent with DFNB1 linkage
In these families, segregation analysis has previously been reported as compatible with the involvement of the DFNB1 locus ( Nineteen families living in France (some of them having foreign ancestors, see Materials and Methods), two in New Zealand and 28 in the UK were studied. In these families, cosegregation of the deafness with polymorphic markers had not been analysed. Deaf children from six families living in France were found to be homozygous for the 30delG mutation as well as affected children from two families from the UK (Table To exclude the possibility that the 30delG mutation was simply a common polymorphism in the population, we screened a set of control DNA samples for mutations in the coding part of Cx26 gene. No mutation was detected from a panel of DNA from 51 unrelated parents or grand-parents of CEPH families (102 chromosomes) from various Caucasian groups and from 68 unrelated individuals living in France (136 chromosomes).
Table
Mutations in small families uncharacterised for DFNB1 linkage, living in France, New Zealand and the UK
Analysis of control individuals
Family (geographical origin)
30delG mutation
Other mutation
Deafness
DFNB1-linked families
S15 (sTu)
homozygous
-
profound
S19 (sTu)
homozygous
-
profound
ST (sTu)
-
homozygous E47X
profound
20 (nTu)
homozygous
-
profound
60 (nTu)
homozygous
-
profound
LH (Leb)
homozygous
-
severe-profound
Families consistent with DFNB1 linkage
51 (NZ)
homozygous
-
severe-profound
1160 (NZ)
homozygous
-
moderate-severea
1608 individual III.20 (NZ)
homozygous
-
profoundb
1773 (NZ)
heterozygous
-
profound
1873 individual II.3 (NZ)
homozygous
-
moderate
1873 individual II.2 (NZ)
-
heterozygous 31del38
profound
1877 (NZ)
homozygous
-
profound
1879 (NZ)
homozygous
-
severe-profound
9670 (Aus)
-
delE118/R148P
moderate-severe
Families uncharacterised for DFNB1 linkage
P1 (Fr)
homozygous
-
severe-profound
P3 (Leb)
homozygous
-
severe-profound
P5 (Fr)
homozygous
-
profound
P6 (Fr)
heterozygous
-
severe-profound
P9 (Por)
homozygous
-
severe-profound
P10 (Fr)
homozygous
-
severe-profound
P11 (Fr)
heterozygous
-
moderate-severe
P14 (Alg)
heterozygous
-
moderate-severe
P16 (mother/Fr, father/Pol)
homozygous
-
severeb
P17 (Fr)
heterozygous
-
severec
1885 (NZ)
heterozygous
-
profound
19002 (UK)
homozygous
-
moderate-severed
19010 (UK)
heterozygous
-
profound
19011 (UK)
homozygous
-
profound
19012 (UK)
heterozygous
-
profound
19020 (UK)
heterozygous
-
moderatee
19025 (UK)
heterozygous
-
profound
19029 (UK)
heterozygous
-
moderate-severed
19038 (UK)
heterozygous
-
profound
19039 (UK)
heterozygous
-
moderatef
19048 (UK)
heterozygous
-
moderatee
19053 (UK)
heterozygous
heterozygous 310del14
profound
19054 (UK)
heterozygous
-
profound
19073 (UK)
heterozygous
-
moderate-severe
bModerate hearing loss in mother (bordering on severe at high frequencies).
cMild hearing loss in father, these parents being heterozygous carriers for the 30delG mutation.
dModerate-severe in one ear, severe in the other ear.
eModerate in one ear, profound in the other ear.
fModerate in one ear, severe in the other ear. >
DISCUSSION
The present data allow an estimate of the frequency of DFNB1-associated deafness among prelingual autosomal recessive deafness in three geographic populations, New Zealand/Australian, French and British. Previous indications that the DFNB1 locus might be an important contributor to recessive prelingual deafness in a New Zealand/Australian population (
Moreover, the present study establishes that the contribution of the DFNB1 locus predominantly results from a newly identified 30delG mutation. The prevalence of the 30delG mutation relative to all Cx26 mutations can be tentatively estimated by pooling the results obtained from the 39 mutation-positive families and by allowing one independent chromosome for each of the six consanguineous homozygous families and two independent chromosomes for each of the nonconsanguineous families. Of the 72 mutated chromosomes thus defined, 50 (69%) carry the 30delG mutation. Every other identified mutation occurs only once. According to the estimated frequency of recessively inherited prelingual deafness (1/2000) the 30delG mutation is one of the most frequent disease mutations so far described.
Is the 30delG mutant allele due to founder effect, or can the same mutation recur due to particular qualities of the gene DNA sequence (`hot spot of mutation')? We favour the latter hypothesis for the following reasons. Firstly, another Cx26 mutation, a 38 bp deletion was detected, in which the last nucleotide before the deleted sequence was the same 30G. Secondly, there are characteristics of the Cx26 DNA sequence at the 30G site or in the immediate vicinity that indicate a `mutation hot spot' propensity. A Chi consensus motif (GCTGGTGG) extends from 19 bp downstream of nucleotide 30G and this sequence, which is known to promote recombination in the Escherichia coli genome (
The fact that our analyses would not have picked up mutations in the 5[prime] and 3[prime] non-coding sequences or in the promoter region, may account for the present failure to identify a presumed partnering Cx26 mutation in 16 deaf children heterozygous for the 30delG mutation. Alternatively, an interaction with a mutation in a different connexin gene may be the explanation: most connexins are able to form intercellular channels with other connexins at gap junctions (`heterotypic channels') (
We have stressed the difficulties encountered in genetic counselling for prelingual non-syndromic deafness due to the inability to distinguish genetic and non-genetic deafness, in those families presenting with a single deaf child. Our findings indicate a useful role for a 30delG mutation search in such families. Since this would be a focused search for just the one mutation, this should be a pratical proposition for most molecular laboratories. It will be important to confirm a high incidence of the 30delG mutation in other populations of various origins. Finally, given the observation that a moderate hearing loss can affect some individuals homozygous for the 30delG mutation (see Table
MATERIALS AND METHODS
Patients
Sixty-five affected Caucasian families from various geographical regions, mainly France, New Zealand and Australia, Tunisia and Lebanon, and the UK, were studied. They could be classified into three categories: (i) consanguineous families each having a significant linkage to the DFNB1 locus; (ii) small non-consanguineous families in which linkage analysis was compatible with the involvement of DFNB1; and (iii) small families in which no linkage analysis had been undertaken.
The first category consists of six large families living in geographically isolated regions. Five are from Tunisia, two from the north and three from the south. Linkage to the DFNB1 locus in the two families from northern Tunisia (families 20 and 60) has previously been reported (
The second category of patients comprises eight New Zealand families with at least two deaf siblings (families 51, 1160, 1548, 1608, 1773, 1873, 1877, 1879) and one Australian family (9670). Family 1608 is atypical in that four siblings, sharing the same DFNB1 marker haplotypes, have a mild to moderate deafness (bordering on severe at high frequencies), with the child of one of them (III:20) being profoundly deaf. In family 1873, the unrelated parents (individuals II.2 and II.3) are deaf as are their two children, and we therefore considered this as two families, bringing to 10 the total of independent families. Apart from families 1608 and 1873, no parent acknowledged any hearing impairment. These nine families showed cosegregation between deafness and polymorphic markers of the DFNB1 region, with maximum individual lod scores ranging from 0.6 to 1.2. Ten other families in the original study of Maw et al. (
The third category is composed of 19 families living in France, two in New Zealand and 28 in UK, each with at least two affected children. No parent acknowledged any hearing impairment, except for the mother in family P16 and the father in family P17, each of whom had a moderate and progressive high-frequency hearing loss. Five of the families living in France had foreign ancestors from Lebanon (family P3), Turkey (family P4, not shown), Portugal (family P9), Algeria (family P14) and Poland (father in family P16). In two of the families (P7, not shown and P14), the parents were distantly related.
Amplification of the coding exon of Cx26
PCR amplifications were carried out on genomic DNA using a set of primers that allowed the amplification of the entire coding sequence of the Cx26 gene, which consists of a single coding exon (
DNA sequencing
Sequencing of the PCR products and some subcloned PCR products was performed as previously described (
ACKNOWLEDGEMENTS
We thank the families for their contribution to this study. We thank Fabienne Levi-Acobas and Sébastien Chardenoux for expert technical assistance, Marc Jean-Pierre for very helpful discussions, and Jean-Pierre Hardelin, Vasiliki Kalatzis and Bob Williamson for critical reading of the manuscript. This work was supported by grants from EEC (PL95-1324), from France (INSERM-DGRST, CNRS-PICS and AFM), from New Zealand (Deafness Research Foundation and Oticon Foundation), from Australia (National Health and Medical Research Council) and from UK (Hearing Research Trust, Wellcome Trust, Medical Research Council).
REFERENCES
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Copyright
Oxford University Press, 1997
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