Elastin: genomic structure and point mutations in patients with supravalvular aortic stenosis
Elastin: genomic structure and point mutations in patients with supravalvular aortic stenosisMayada Tassabehji*, Kay Metcalfe, Dian Donnai, Jane Hurst1, William Reardon2, Michael Burch3 and Andrew P. Read
Department of Medical Genetics, St Mary's Hospital, Manchester M13 OJH, UK, 1Department of Clinical Genetics, Churchill Hospital, Oxford OX3 7LJ, UK, 2Institute of Child Health, London WC1N 1EH, UK and 3Department of Paediatric Cardiology, John Radcliffe Hospital, Oxford OX3 9DU, UK
Received February 24, 1997;Revised and Accepted April 23, 1997
We describe the complete exon-intron structure of the human elastin (ELN) gene located at chromosome 7q11.23. There are 34 exons occupying ~47 kb of genomic DNA. All exons are in-frame, allowing exon skipping without disrupting the reading frame. Microsatellites are located in introns 17 and 18. Deletions of all or large parts of the ELN gene have been previously reported in two patients with supravalvular aortic stenosis (SVAS), and SVAS is also a frequent feature of Williams syndrome, where patients are hemizygous for ELN. We list primer pairs for amplifying each exon, with flanking intron, from genomic DNA to allow detection of point mutations in the ELN gene. We show that some patients with isolated SVAS have point mutations that are predicted to lead to premature chain termination. Knowledge of the genomic structure will allow more extensive mutation screening in genomic DNA of patients with SVAS and other conditions.
The protein elastin is responsible for the characteristic elastic properties of many tissues including skin, lung and large blood vessels. The elasticity of these tissues depends on elastic fibres in the extracellular matrix. These are composed of an amorphous and a microfibrillar component, and the amorphous component (~90% of the mature elastic fibre) is composed of elastin. The human elastin cDNA has been isolated and sequenced (1 ). Early reports that ELN mapped to chromosome 2 proved mistaken; it maps to 7q11.2 (2 ) and has 34 exons. Comparative studies showed that the human cDNA lacks sequences corresponding to exons 34 and 35 of the bovine elastin gene, so that human exon 34 is homologous to bovine exon 36 (1 ).
The initial product of the ELN gene is tropoelastin, a 72 kDa polypeptide with a characteristic primary structure of alternating hydrophobic and cross-linking domains. The hydrophobic domains are thought to form a floppy structure of stacked [beta]-sheets with [beta]-turns that is responsible for the resilience of the protein. After secretion, individual tropoelastin chains are covalently cross-linked to form a highly insoluble network of elastic fibres. Cross-linking requires oxidation of lysyl residues by the copper-dependent enzyme lysyl oxidase (3 -5 ). Alanine(A)- lysine(K) rich motifs (A3-10KA2-3K) occur in the cross-linking domains in exons 15, 17, 19, 21, 23, 27, 29 and 31, and in modified form in exons 6 and 25.
Since elastin is a major component of the aorta and large arteries, disruption of the elastin gene might be expected to cause vascular problems. One candidate condition is supravalvular aortic stenosis (SVAS) (6 ). SVAS is a congenital narrowing of the ascending aorta. The condition is frequently progressive and may lead to heart failure and early death, so that patients often need corrective surgery in early infancy. SVAS may occur sporadically or as a familial condition with autosomal dominant inheritance (7 ). Linkage analysis mapped familial SVAS to chromosome 7q (8 ) and a family in which a translocation t(6:7)(p21.1;q11.23) co-segregated with SVAS showed disruption of the elastin gene at 7q11.23 (9 ,10 ). Subsequently large intragenic deletions involving the elastin gene have been reported in two unrelated SVAS patients (11 ,12 ). SVAS also occurs as part of Williams syndrome (WS). WS (MIM 194050) is a contiguous gene syndrome caused by a microdeletion at 7q11.23 (13 ). WS patients are hemizygous for the elastin gene. Affected individuals are mentally retarded but with an unusual cognitive profile (they speak fluently but have poor visuospatial skills). They have dysmorphic facies, frequently heart abnormalities (mainly SVAS), short stature, hyperacusis, and often infantile hypercalcaemia. Other connective tissue phenotypes associated with WS include hernias, hoarse voice, joint abnormalities, and premature ageing of skin.
We isolated a 125 kb bacterial artificial chromosome (BAC) containing the complete ELN coding sequence from a commercial library (Genosys), by screening with primers designed from the 5' and 3' ends of the published elastin cDNA sequence (1 ). We used fluorescent in situ hybridisation (FISH) to confirm that the BAC mapped to 7q11.23 (data not shown). To define the unpublished exon-intron boundaries of the ELN gene, PCR primers were designed randomly using the last published exon boundary from the 3' end of the human cDNA sequence (1 ) as a starting point, and PCR products from genomic DNA were sized and sequenced. In cases where no amplification was obtained between a set of primers, the vectorette method was used to define exon boundaries, as described by Riley et al. (15 ). Primers designed from the intronic sequence were used to amplify each exon from genomic DNA, and in each case gave a product of the expected size. Our method of analysis leaves open the possibility that some transcripts might contain additional exons not present in the published cDNA sequence we relied on, such as the bovine exon 34 and 35 sequences that are missing from the published human sequence.
Figure 1 shows the complete ELN cDNA sequence with exon-intron boundaries marked, and Table 1 summarises the splice junctions and surrounding sequence in the elastin gene. The coding sequence we have determined agrees with that published by Indik et al. (1 ). It comprises 2361 bp (including the termination codon) split into 34 small exons ranging in size from 30 to 225 bp and extending over ~47 kb of genomic sequence. The introns range from 82 bp to ~10 kb, and all the exon-intron boundaries conform to the published consensus sequences (16 ). Twenty-seven out of the 33 codons split by introns encode glycine residues (Table 1 ).
X = cross-linking domain. *Subject to alternative splicing.C = C-terminal exon containing conserved cysteines and four basic residues; corresponds to exon 36 of bovine elastin.The polymorphic microsatellite in intron 18 is indicated as (gt)n. It has 17-20 repeats. A second microsatellite, (AG)n, is present in intron 17 ~230 bp upstream of the 3' end.
As previously reported (17 ), the 3' region of the gene is rich in Alu sequences. A BLAST search of our sequence showed that introns 18, 19, 22, 27, 30, 32 and 33 gave high homology with Alu-like sequences, especially Alu J and Alu Sx. Introns 30 (~50% Alu), 32 (~40% Alu) and 33 (~33% Alu) were particularly rich in Alu-like sequences.
Intron sequencing detected two microsatellite repeats. An (AG)n repeat was located ~230 bp upstream of the 5' acceptor splice site of exon 18. At 10 bp downstream from the 3' donor splice site of exon 18 is a (GT)17-20 repeat. This latter repeat has been reported previously (2 ; because of ambiguity in numbering of exons, it was said to be in intron 17), and is polymorphic with heterozygosity 0.626.
Patients with diagnosed SVAS were analysed for mutations in the elastin gene. Intronic primers were designed to amplify each of the 34 exons from genomic DNA (Table 2 ). Mutations were sought by combined single-strand conformation polymorphism (SSCP) and heteroduplex analysis (18 ). Where bands of abnormal mobility were seen, the relevant exon was sequenced.
. Primer sequences for the amplification of exons 1-34 of the human elastin gene
Patient SVAS12presented at birth with a heart murmur. Cardiac catheterisation was thought to show obstruction, and an initial diagnosis of hypertrophic obstructive cardiomyopathy was made. The patient was seen at another centre at the age of 3 years for assessment of his heart murmur. Echocardiography suggested SVAS on the basis of waisting of the ascending aorta and post-stenotic dilatation. Subsequent cardiac catheterisation revealed a significant pressure gradient (106 mm Hg) between his left ventricle and aorta. At surgery he was found to have severe SVAS, a thickened aortic valve, stenosis at the origin of the right pulmonary artery, subvalvular infundibular pulmonary stenosis and severe left ventricular hypertrophy. He did not have the facial features of WS, and his psychomotor development was normal. Of significance in the family history, his brother died suddenly in the first year of life and at autopsy was noted to have repaired SVAS, repaired central pulmonary artery stenosis and marked ventricular hypertrophy. The aortic valve and proximal aorta were markedly dysplastic with extreme thickening beyond the valve. The proband's mother had presented to cardiologists in childhood with a murmur and a clinical diagnosis of aortic stenosis was made.
SVAS12 showed no evidence of a large deletion: elastin FISH (WSCR probe, Oncor) was normal. Amplified DNA gave an abnormal band in exon 26 on heteroduplex analysis, which was not present in 40 non-SVAS controls (Fig. 2 ). Sequencing revealed insertion of a T base in codon 606 of exon 26, producing a frameshift predicted to cause premature termination 10 codons downstream:
Elastin is an important structural component of the aorta and pulmonary arteries. The walls of these large elastic vessels are primarily composed of alternating layers of smooth muscle and elastic fibres. Two theories explaining the molecular pathology of SVAS can be proposed: the defects in elastin could be qualitative or quantitative. Evidence favouring a quantitative mechanism rather than production of abnormal elastin, as the pathogenic mechanism in SVAS includes the fact that Williams syndrome (WS) patients are hemizygous for elastin because of a chromosomal microdeletion, and these patients are at high risk of SVAS. Also elastin mutations reported so far in patients with isolated SVAS have been disruptions or large deletions. Curran et al. (9 ) reported a family segregating a balanced translocation t(6:7)(p21.1;q11.23) with a breakpoint in intron 27 of the ELN gene. Ewart et al. (11 ) described a 100 kb deletion in an SVAS patient, which deleted all 3' ELN sequences from exon 28. Olson et al. (12 ) reported a patient with severe SVAS who had a 30 kb intragenic deletion that removed exons 2-27 of the elastin gene whilst maintaining the 3' terminus intact. Our two SVAS patients have point mutations that are predicted to truncate the transcript in exon 21 or exon 26. ELN transcripts lacking the 3' terminus may be unstable or poorly translated. High sequence homology (80%) in the 3' untranslated region in different species suggests that it has an important conserved function and may play a role in stabilising the mature mRNA or in modulating translation (20 ). Finally, variable expressivity and reduced penetrance of SVAS is seen both in Williams syndrome and familial isolated SVAS. SVAS varies from subtle cardiac abnormalities to severe stenosis of multiple arteries, although there is no evidence of locus heterogeneity. In our two SVAS families with point mutations, each mutation manifests as severe SVAS in the proband,but as mild cardiac features or non-penetrance in the mothers. Such variability is typical of phenotypes produced by haploinsufficiency, where genetic background is expected to have a major modifying effect.
The alternative hypothesis is that a dominant negative elastin mutation could result in SVAS. Research into the assembly of elastic fibres suggests that the C-terminus of tropoelastin mediates elastin polymerisation through interaction with microfibril-associated glycoproteins (MAGP) (21 ). If the mutant elastin genes described above are expressed, truncated proteins would probably be produced that would lack several important features. These include consensus sites for desmosine cross-linking, exon 36 (which contains important functional domains), and also the two highly conserved cysteine residues in exon 34 thought to be important for interaction with fibrillin in arrays of microfibrils, as well as a MAGP binding domain. Truncated proteins in which some but not all domains critical for intermolecular interaction are absent may disrupt post-translational processing and consequently, the development of elastic fibres.
It is possible that SVAS arises as a result of both mechanisms, depending on the particular mutation involved. Haploinsufficiency of elastin, where a half dose of normal elastin is being produced, or abnormal elastic fibres arising from dominant negative elastin mutations, could both manifest as SVAS. It is intriguing that WS patients show a wider range of connective tissue phenotypes than SVAS patients-whether this is caused by deletion or silencing of other adjacent genes remains to be seen. However, no obvious phenotype-genotype correlation has emerged in SVAS.
Elucidating the molecular pathogenesis of SVAS may also have implications for treatment. Pre-natal diagnosis can be offered to families with autosomal dominant SVAS to allow early diagnosis and treatment. At present vascular surgery is the only treatment for SVAS; however, it has been suggested that early intervention with drug treatment to lower the heart rate and blood pressure may slow progression of the disease (9 ). The use of elastase inhibitors in preventing pulmonary hypertension and associated pulmonary arterial abnormalities is also being investigated (23 ).
Defining the elastin gene structure has allowed us to identify the first point mutations that cause SVAS and will enable us to carry out mutation screening on a larger scale. Continued mutation analysis in SVAS and WS patients may help distinguish the vascular pathology of these conditions, and will allow other conditions to be investigated for involvement of elastin mutations.
A 125 kb BAC clone containing the elastin gene was isolated from a BAC library (Genosys) by PCR screening with primers P1-P2 and P3-P4, designed from the ELN cDNA sequence:
Primer
P1:5'
CCG
GGA
TAA
AAC
GAG
GTG
CGG
GAG
Primer
P2:5'
TCC
AGG
CCG
AGA
GGG
GTG
GAG
GAT
Primer
P3:5'
AGC
CGA
AAC
TGA
GAG
GGG
CCG
GAC
Primer
P4:5'
TCA
TTT
TCT
CTT
CCG
GCC
ACA
AGC
FISH analysis showed that the BAC hybridised to 7q11.2 and that it was not chimaeric. Vectorette libraries were constructed from EcoRI, EcoRV, RsaI and PvuII-digested BAC DNA and subjected to PCR amplification using a vectorette specific primer and one cDNA primer as described by Riley et al. (15 ). Column-purified PCR products were sequenced by direct double-strand fluorescent cycle sequencing using an ABI 373 sequencer. Intron PCR was carried out using the BCL XL Expand system according to the manufacturer's instructions.
Elastin FISH was carried out using the Oncor WSCR probe according to manufacturer's instructions. Intron 18 microsatellite analysis was carried out by PCR amplification of genomic DNA using the following primers:
ELN
intron
18F:5'
ATG
AGA
CGT
GGT
CAA
GGG
TAT
ELN
intron
18R:5'
GGG
ATC
CCA
GGT
GCT
GCG
GTT
All amplifications were carried out using 100 ng of genomic DNA and 10 pmol of each primer in 20 [mu]l reaction volumes. Cycle conditions were: 95oC for 2 min, then 27 cycles of: 94oC for 1 min, 60oC for 1 min and 72oC for 1 min, with a final extension step of 5 min at 72oC. PCR products were electrophoresed on 8% polyacrylamide gels (acrylamide:N,N' bis-acrylamide 19:1) for 3 h at 300 V then visualised by silver staining.
Exons 21 and 26 of the ELN gene were PCR amplified using the primers listed below and amplification conditions as described above. Mutations were detected by a combination of SSCP and heteroduplex analysis (18 ). Briefly, PCR products were run on 1 mm thick non-denaturing 8% polyacrylamide gels (acrylamide:N,N' bisacrylamide 49:1) at 4oC overnight at a constant 350 V. Products were detected by silver staining. Mutations were initially characterised by direct double-strand cycle sequencing of column-purified PCR products in both orientations with a matched control on a fluorescent sequencer (ABI 373).
For confirmation of the exon 21 mutation, HindIII digestion of PCR products was carried out according to manufacturer's instructions (Gibco-BRL). The restriction fragments were separated on a 2% agarose gel and visualised by ethidium bromide staining. For confirmation of the exon 26 mutation, ARMS PCR (19 ) was carried out using the ELN X26R primer and a primer designed to amplify the mutant allele only:
ELN
X26R:
5'
CCC
AGA
TGC
TTA
GGA
GAA
CCT
AA
ELN
X26F
ARMS
M:
5'
TGG
ACT
TGG
AGT
TGG
TGC
TGA
TT
No amplification is obtained in the absence of the mutation, so intron 26 of the elastin gene was used as an internal control for amplification, which gave a 450 bp product. PCR was carried out as above. Cycle conditions were: 95oC for 2 min, then 30 cycles of 94oC for 1 min, 55oC for 1 min and 72oC for 1 min, with a final extension step of 5 min at 72oC. The products were separated on a 2% agarose gel.
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23 Rabinovitch, M. (1996) Alterations in elastin and cardiovascular malformations of Wiliams syndrome. 7th International Professional Conference on Williams syndrome: biology, medicine, behavior. Philadelphia July 1996.
*To whom correspondence should be addressed. Tel. +44 161 276 6608; Fax: +44 161 276 6606; Email: m.tassabehji{at}man.ac.uk
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