| Human Molecular Genetics | Pages |
The Treacher Collins syndrome (TCOF1) gene product, treacle, is targeted to the nucleolus by signals in its C-terminus
Introduction
Results
Cellular localization of treacle
Discussion
Materials And Methods
GFP-fusion constructs
Immunofluorescence
Acknowledgements
Abbreviations
References
The Treacher Collins syndrome (TCOF1) gene product, treacle, is targeted to the nucleolus by signals in its C-terminus
INTRODUCTION
Treacher Collins syndrome (TCOF1) is an autosomal dominant disorder of craniofacial development. The clinical features include hypoplasia of the facial bones, in particular the mandible and zygomatic complex, coloboma of the lower eyelid with a lack of eyelashes medial to the defect, downward slanting of the palpebral fissures, cleft palate and conductive hearing loss due to malformations of the auditory ossicles (1). The structures affected in TCOF1 arise from the first and second branchial arches that form during the first 4 weeks of development and are affected in a symmetrical manner (2). TCOF1 occurs at a frequency of 1/50 000 live births and is a highly penetrant disorder with a wide range of expressivity (3,4).
The gene responsible for TCOF1 has been cloned and encodes a 1411 amino acid protein, treacle (5-7). Treacle is a low complexity protein that has a 213 residue N-terminus followed by 10 repeating units of acidic and basic residues and a C-terminus with multiple putative nuclear localization signals (NLSs). These putative NLSs conform to one of two types of signals. One is a short four residue consensus sequence that mediates synthetic peptide translocation to the nucleus (K-R/K-X-R/K) (8). The second is a consensus bipartite signal that contains two regions of basic residues separated by 10 amino acids (9). An additional potential NLS is located in the N-terminus of the protein. Each repeating unit in the gene is confined to a single exon (exons 7-16). Within the repeat units are putative casein kinase 2 (CK2) and protein kinase C (PKC) phosphorylation sites (7,10-12). The putative CK2 phosphorylation sites are found in the same region in every repeat unit with the exception of both mouse and human exon 11.
The mouse homolog of the TCOF1 gene has also been identified (12). There is 74.3% nucleotide identity, 61.5% protein identity and 71% similarity between the human and the mouse genes. The highest identity between the two proteins is in the extreme N-terminus, the putative NLSs at the C-terminus and the CK2 phosphorylation sites within the repeated motifs. The mouse protein is 109 amino acids smaller than its human counterpart. Three gaps, one in the N-terminal region, one in the repeat region and one in the C-terminal region, account for the majority of the size difference. Isolation of the mouse cDNA enabled the expression pattern during mouse development to be elucidated. Whole mount in situ hybridization experiments demonstrate involvement of the murine tcof1 gene in the craniofacial complex during embryonic development (12).
Sequence similarity has been identified between treacle and two related nucleolar phosphoproteins Nopp140 in rat and xNopp180 in Xenopus (7,12-14). The similarity is predominantly in the putative CK2 and PKC phosphorylation sites in the repeated domains. Nopp140 is also a low complexity protein with 10 alternating acidic and basic repeat units and several NLSs in its C-terminus. Nopp140 has been shown to be an NLS-binding protein that travels on tracks between the cytoplasm and the nucleolus (13,15). It is thought to shuttle proteins involved in ribosome assembly that are synthesized in the cytoplasm, translocated to the nucleus and targeted to the nucleolus (13). The human (p130) and yeast (srp40) homologs of Nopp140 have also been cloned (16,17). Analysis of srp40 mutants in yeast predicts that it has a dispensable role in preribosome assembly or transport (18). Interestingly, Nopp140 also functions as a transcriptional activator of the [alpha]1 acid glycoprotein (AGP) gene in conjunction with a gene specific enhancer protein (19).
Although treacle demonstrates sequence similarity to Nopp140, the functional homology to this class of nucleolar phosphoproteins had not been analyzed. By fusing the murine tcof1 gene to green fluorescent protein (GFP), we have determined that the cellular localization of treacle is nucleolar and that the 41 most C-terminal amino acids are necessary and sufficient to direct that localization. We have also shown there are at least two functional NLSs in the last 127 residues of the protein. Furthermore, we have shown that residues affected in the most C-terminal mutation identified to date are involved in the nucleolar localization signal (NoLS) and that the functional NLSs flank this region. This study provides the first direct analysis of the protein treacle and demonstrates that the protein involved in TCOF1 is a nucleolar protein.
RESULTS
Cellular localization of treacle
In order to determine the subcellular localization of treacle and the regions of the protein that mediate this localization, we have generated a series of full-length and deletion GFP-treacle fusion constructs. Figure
Figure 1. (A)Protein structure of treacle showing the acidic-basic repeats in gray and the conserved putative NLSs and NoLS C-terminal region in black. The lines below the protein show the GFP-fusion constructs with the entire coding region of the gene and various deletion constructs. To the right of the constructs summarizes the localization of the constructs in the cell. (B) Amino acid comparison of the last 161 residues of the C-terminal region between the mouse and human treacle proteins. This amino acid sequence comprises the C fusion construct. The 1, 3 and 4 above the sequence designate the region where each of the C[Delta]1, C[Delta]3 and C[Delta]4 fusion constructs begins, respectively. The C[Delta]2 construct includes amino acids 1176-1270 and is the region designated by the two black arrowheads. The 4 bp NLS consensus sites are underlined, the conserved bipartite NLSs are shown in bold, and the putative NoLS is boxed. Cos-1 cells were chosen for transfection as they have distinct nucleoli which can be seen as dense circular structures in the nucleus following DAPI staining. Figure Figure 2. Treacle-GFP fusion constructs transfected into Cos-1 cells. (A) DAPI-stained Cos-1 cells reveal punctate staining of nucleoli, which appear as dark circular orbs. (B) The same two cells in which the nucleoli are identified by rhodamine-conjugated IgG following detection with anti-B23 antibodies. (C) A dividing cell demonstrates localization of the NRCo construct to the cytoplasm. This same pattern of localization was seen with the GFP pS65T-C1 vector alone. (D) Four nuclei stained with DAPI in blue and their nucleoli visualized with anti-B23 antibodies in red. (E) The same cells demonstrate localization of the NRCoC construct containing the full-length treacle protein to the nucleoli. (F) Localization of the C construct to the nucleolus captured with a double band filter allowing visualization of both DAPI and GFP fluorescence. (G) The C[Delta]2 construct localizes throughout the nucleoplasm with faint nucleolar localization. (H) The C[Delta]3 construct mediates effective localization to the nucleolus, revealed by bright GFP fluorescence over the nucleoli. (I) The C[Delta]4 construct shows diffuse nuclear localization and faint nucleolar localization. The GFP fusion construct encoding the entire treacle protein (NRCoC) shows intense signals in the nucleoli (Fig. Additional deletion constructs within the C-terminus were constructed to further characterize the localization signals in this region. Localization to the nucleolus was seen with constructs C[Delta]1 and C[Delta]3 which contain the 127 and 41 most C-terminal residues respectively (C[Delta]1, data not shown; C[Delta]3, Fig.
DISCUSSION
Based on sequence homologies, the gene responsible for TCOF1 was predicted to belong to a family of nucleolar phosphoproteins. The cellular localization of murine treacle to the nucleolus provides the first direct evidence that treacle is part of this family of genes. The nucleolus has been shown to be the site of rRNA synthesis and preribosomal assembly. Nucleolar phosphoproteins are thought to play important roles in preribosome assembly, transport of ribosomal proteins from the cytoplasm to the nucleolus and transport of preribosomal units from the nucleolus to the cytoplasm (reviewed in ref. 21).
Treacle is predicted to have multiple NLSs in the C-terminus. We have shown that there are at least two functional NLSs from residues 1176 to 1302 that are sufficient for nuclear localization (Fig.
The NoLS is also located in the last 41 amino acids of the protein since construct C[Delta]3 shows correct cellular localization. There is no known consensus NoLS but a variety of signals mediate functional interactions with specific proteins or nucleic acids that confer localization to the nucleolus. In nucleolin (C23), two regions that interact with RNA were identified to be important in nucleolar localization. One region contains an RNA recognition motif (RRM) and the other region is a glycine/arginine rich domain. The RRM region is also known to be the region where C23 binds to second nucleolar phosphoprotein, B23 (22,23). A small region identified in the HIV tat protein seems to be important in nucleolar localization (QRRRAP) (24). Mutations in the first two arginines in this sequence abolish the NoLS of this protein. This domain has been shown to be the region required for B23 binding of tat (25). Of the other NoLSs that have been characterized, the common motif seems only to be that of a basic domain, some arginine rich and others lysine rich (26,27). The terminal 41 amino acids of treacle is a highly basic region containing 14 lysines. These residues are conserved in the human protein (Fig.
The location of this functional domain of treacle in the C-terminus has implications for disease pathogenesis. The majority of identified mutations create premature stop codons in the protein (20). Mutations have been identified along the whole length of the gene. It has been shown previously that nonsense mutations in a number of different genes reduce the transcript level of the mutant allele by affecting transcript stability (28-34). Thus, the lack of or reduced amount of transcript from the mutant allele could reduce the normal amount of protein product by half and haploinsufficiency of treacle may be one mutational mechanism. An exception to this phenomenon occurs if the premature termination codon is located within the last third of the exon proceeding the exon containing the native termination codon. If the mutation is located in that region then the mRNA is not degraded (29,35,36). Interestingly, the most C-terminal mutation identified to date in the TCOF1 gene is at residue 1379 (20). A 5 bp insertion changes the reading frame of the protein and creates a premature termination codon 13 residues downstream. This termination codon is 19 amino acids from the native stop codon. This mutation also disrupts the NoLS signal of treacle at the precise residue that is missing in the C[Delta]2 construct. The C[Delta]2 construct has nuclear but inefficient nucleolar localization (Fig.
Sequence homology predicts treacle to be a member of a family of nucleolar phosphoproteins and we have shown that the murine treacle is indeed a nucleolar protein. The possible functions of this class of proteins include nucleologenesis, the transport of proteins or ribosomal subunits between the nucleolus and cytoplasm and stage-specific transcription activation (13,15-19). Though ribosome assembly may be one important function of treacle, this does not preclude it from having other cellular functions similar to Nopp140. If treacle's sole function is related to the production of ribosomes which in turn affects the rate of protein translation, then how the global effects of this defect are manifested solely in the development of the craniofacial region remains a mystery. A high rate of protein translation may well be required in rapidly growing embryonic tissues. In other tissues of the body specific proteins may be able compensate for the function that treacle performs in the craniofacial region.
MATERIALS AND METHODS
GFP-fusion constructs
In order to determine the subcellular localization of treacle, GFP- fusion constructs were made encoding various protein domains of the murine treacle homolog. All treacle partial cDNAs were cloned into the GFP C-terminal protein fusion vector pS65T-C1 (Clontech, Palo Alto, CA). Constructs were as follows: N (N-terminal residues 1-240), 277 bp [lambda]4 (13) PmlI/PvuII fragment, and NR (N-terminus plus repeat region residues 1-830), 2.5 kb [lambda]4 PmlI/HincII fragment, both into pS65T-C1 vector digested with Ecl136II; NRCo (residues 1-1111 deleted for C-terminus only), 3.3 kb [lambda]4 PmlI/NgoM1 fragment into pS65T-C1 Ecl136II/XmaI vector; NRCoC (entire treacle), 3.5 kb [lambda]4 Pml1/SfiI and 523 bp 3[prime] RACE (13) SfiI/Pst1 fragments into pS65T-C1 Pml1/Pst1; C (C-terminal residues 1142-1302), 694 bp 3[prime] RACE Pst1 fragment into pS65T-C1 Pst1. C[Delta]1 (C-terminal residues 1176-1302), C[Delta]2 (residues 1176-1270), C[Delta]3 (residues 1262-1302) and C[Delta]4 (residues 1271-1302) were all constructed following Ecl136II/EcoRI digestion of PCR products and ligation into similarly digested pS65T-C1 vector. PCR products were generated with the following primers: C[Delta]1: MCRE.F2 5[prime]-CCAGATCTCGAGCTCTAGAAGCTGGGGCCCCAAAG-3[prime] and MCRE.R1 5[prime]-GGGGATCCTCTAGAGAATTCTCCGGAATCACACGGCAGGCTCGGCTGA-3[prime]; C[Delta]2: MCRE.F2 and MCRE.R2 5[prime]-GGGGATCCTCTAGAGAATTCTCCGGACTTTTTCTCCTTGTCTTTTTTTTTCTTGAG-3[prime]; C[Delta]3: MCRE.F3 5[prime]-CCAGATCTCGAGCTCTCAAGAAAAAAAAAGACAAGGAGAAAAAGG-3[prime] and MCRE.R1; C[Delta]4: MCRE.F4 5[prime]-CCAGATCTCGAGCTCTCGAAAAGAAGAAAGGAAAAAAGTC-CCTG-3[prime] and MCRE.R1.
Immunofluorescence
Cos-1 cells were grown to 75% confluency at 37°C in Dulbecco's modified Eagle's medium (DMEM) with 10% fetal bovine serum (FBS). Ten micrograms of each GFP-treacle fusion construct was electroporated into 8 × 105 cells resuspended into 10 mM Tris-DMEM, pH 7.6, at 1000 µF, 48[Omega] and 150 V. Cells were then plated onto coverslips and incubated at 375C in DMEM/10% FBS for 48 h. Cells were then washed three times with 1× PBS, fixed with 3.7% formaldehyde in 1× PBS for 30 min at room temperature, washed again three times in 1× PBS, stained with DAPI and mounted with ProLong Antifade (Molecular Probes, Eugene, OR). In order to identify the nucleoli, cells were permeabilized with 0.5% NP-40 for 5 min in 1× PBS, washed three times in 1× PBS, blocked with 1:100 horse serum in 3% BSA/1× PBS for 30 min at room temperature and washed again three times with 1× PBS. Anti-B23 (Santa Cruz Biotechnology, Santa Cruz, CA) was diluted 1:1000 in 3% BSA/1× PBS and incubated for 1 h at room temperature. Following three washes in 1× PBS, rhodamine-labeled (TRITC) conjugated anti-goat IgG (Sigma, St Louis, MO) was diluted 1:250 and incubated for 1 h at room temperature. Following three washes of 1× PBS, cells were stained with DAPI and mounted with ProLong Antifade (Molecular Probes). Slides were viewed with a Zeiss axioskop epifluorescence microscope equipped with a Zeiss plan neofluor oil immersion objective (63×) and a 1.6× optivar. Images were captured using the Oncor Imaging System (Gaithersburg, MD).
ACKNOWLEDGEMENTS
We thank Dr Michael Dixon for the [lambda]4 and 3[prime] RACE tcof1 cDNA clones; Drs Leslie M. Thompson, Kyoko Yokomori, Robert K. Moyzis, Erik D. Foehr and Mary G. Prieve for helpful discussions and Ulla Bengtsson for technical assistance. This work was partially supported by NIH grant 1RO1AR42377.
ABBREVIATIONS
AGP, [alpha]1 acid glycoprotein; BSA, bovine serum albumin; B23, nucleophosmin; CK2, casein kinase 2; C23, nucleolin; DMEM, Dulbecco's modified Eagle's medium; FBS, fetal bovine serum; GFP, green fluorescent protein; NLS, nuclear localization signal; NoLS, nucleolar localization signal; PKC, protein kinase C; RRM, RNA recognition motif; TCOF1, Treacher Collins syndrome.
REFERENCES
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