Human Molecular Genetics, Vol 7, 1611-1618, Copyright © 1998 by Oxford University Press
DJ Kleinjan and V van Heyningen
The spatially, temporally and quantitatively correct expression of a gene
requires the presence not only of intact coding sequence, free of adverse
nucleotide changes, but also correctly functioning regulatory control. With
the identification of an increasing number of disease- related genes, the
molecular defect in many cases has been defined. It is becoming clear that
it is not always the transcription unit that bears the defect: there are a
number of cases where the regulation of gene expression has been
compromised. Cases associated with chromosomal rearrangement outside the
transcription and promoter regions are categorized as position effects. A
number of different mechanisms may explain their aetiology. Here, we
examine the human disorders where such position effects are implicated.
Further study of such cases may lead to important insights into mechanisms
of gene regulation and transcriptional control.
REVIEWS
Position effect in human genetic disease
MRC Human Genetics Unit, Western General Hospital, Crewe Road, Edinburgh EH4 2XU, UK.
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
M. Fukami, G. Nishimura, K. Homma, T. Nagai, K. Hanaki, A. Uematsu, T. Ishii, C. Numakura, H. Sawada, M. Nakacho, et al. Cytochrome P450 Oxidoreductase Deficiency: Identification and Characterization of Biallelic Mutations and Genotype-Phenotype Correlations in 35 Japanese Patients J. Clin. Endocrinol. Metab., May 1, 2009; 94(5): 1723 - 1731. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. De, S. A. Teichmann, and M. M. Babu The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome Genome Res., May 1, 2009; 19(5): 785 - 794. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. N. Henrichsen, E. Chaignat, and A. Reymond Copy number variants, diseases and gene expression Hum. Mol. Genet., April 15, 2009; 18(R1): R1 - R8. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Xi, J. Park, G. Ding, Y.-H. Lee, and Y. Li SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry Nucleic Acids Res., January 1, 2009; 37(suppl_1): D913 - D920. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. A. Fantauzzo, M. Tadin-Strapps, Y. You, S. E. Mentzer, F. A.M. Baumeister, S. Cianfarani, L. Van Maldergem, D. Warburton, J. P. Sundberg, and A. M. Christiano A position effect on TRPS1 is associated with Ambras syndrome in humans and the Koala phenotype in mice Hum. Mol. Genet., November 15, 2008; 17(22): 3539 - 3551. [Abstract] [Full Text] [PDF] |
||||
![]() |
B.-Y. Liao and J. Zhang Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous Mol. Biol. Evol., August 1, 2008; 25(8): 1555 - 1565. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Sekkali, H. T. Tran, E. Crabbe, C. De Beule, F. Van Roy, and K. Vleminckx Chicken {beta}-globin insulator overcomes variegation of transgenes in Xenopus embryos FASEB J, July 1, 2008; 22(7): 2534 - 2540. [Abstract] [Full Text] [PDF] |
||||
![]() |
P Bakrania, D O Robinson, D J Bunyan, A Salt, A Martin, J A Crolla, A Wyatt, A Fielder, J Ainsworth, A Moore, et al. SOX2 anophthalmia syndrome: 12 new cases demonstrating broader phenotype and high frequency of large gene deletions Br J Ophthalmol, November 1, 2007; 91(11): 1471 - 1476. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Feuk, C. R. Marshall, R. F. Wintle, and S. W. Scherer Structural variants: changing the landscape of chromosomes and design of disease studies. Hum. Mol. Genet., April 15, 2006; 15(suppl_1): R57 - R66. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Kitamura, M. Danciger, C. Yamashita, N. P. Rao, S. Nusinowitz, B. Chang, and D. B. Farber Disruption of the Gene Encoding the {beta}1-Subunit of Transducin in the Rd4/+ Mouse. Invest. Ophthalmol. Vis. Sci., April 1, 2006; 47(4): 1293 - 1301. [Abstract] [Full Text] [PDF] |
||||
![]() |
B Dlugaszewska, A Silahtaroglu, C Menzel, S Kubart, M Cohen, S Mundlos, Z Tumer, K Kjaer, U Friedrich, H-H Ropers, et al. Breakpoints around the HOXD cluster result in various limb malformations J. Med. Genet., February 1, 2006; 43(2): 111 - 118. [Abstract] [Full Text] [PDF] |
||||
![]() |
A Sharp, K Kusz, J Jaruzelska, W Tapper, M Szarras-Czapnik, J Wolski, and P Jacobs Variability of sexual phenotype in 46,XX(SRY+) patients: the influence of spreading X inactivation versus position effects J. Med. Genet., May 1, 2005; 42(5): 420 - 427. [Full Text] [PDF] |
||||
![]() |
P Aubourg, M Krahn, R Bernard, K Nguyen, O Forzano, I Boccaccio, V Delague, A De Sandre-Giovannoli, J Pouget, D Depetris, et al. Assignment of a new congenital fibrosis of extraocular muscles type 3 (CFEOM3) locus, FEOM4, based on a balanced translocation t(2;13) (q37.3;q12.11) and identification of candidate genes J. Med. Genet., March 1, 2005; 42(3): 253 - 259. [Full Text] [PDF] |
||||
![]() |
R Redon, M Rio, S G Gregory, R A Cooper, H Fiegler, D Sanlaville, R Banerjee, C Scott, P Carr, C Langford, et al. Tiling path resolution mapping of constitutional 1p36 deletions by array-CGH: contiguous gene deletion or "deletion with positional effect" syndrome? J. Med. Genet., February 1, 2005; 42(2): 166 - 171. [Full Text] [PDF] |
||||
![]() |
S M Gribble, E Prigmore, D C Burford, K M Porter, B. L. Ng, E J Douglas, H Fiegler, P Carr, D Kalaitzopoulos, S Clegg, et al. The complex nature of constitutional de novo apparently balanced translocations in patients presenting with abnormal phenotypes J. Med. Genet., January 1, 2005; 42(1): 8 - 16. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Boccia, M. Petrillo, D. di Bernardo, A. Guffanti, F. Mignone, S. Confalonieri, L. Luzi, G. Pesole, G. Paolella, A. Ballabio, et al. DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes Nucleic Acids Res., January 1, 2005; 33(suppl_1): D505 - D510. [Abstract] [Full Text] [PDF] |
||||
![]() |
N Muncke, B S Wogatzky, M Breuning, E A Sistermans, V Endris, M Ross, D Vetrie, C E Catsman-Berrevoets, and G Rappold Position effect on PLP1 may cause a subset of Pelizaeus-Merzbacher disease symptoms J. Med. Genet., December 1, 2004; 41(12): e121 - e121. [Full Text] [PDF] |
||||
![]() |
J. Yan, V. W. Keener, W. Bi, K. Walz, A. Bradley, M. J. Justice, and J. R. Lupski Reduced penetrance of craniofacial anomalies as a function of deletion size and genetic background in a chromosome engineered partial mouse model for Smith-Magenis syndrome Hum. Mol. Genet., November 1, 2004; 13(21): 2613 - 2624. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Castermans, V. Wilquet, J. Steyaert, W. van de Ven, J.-P. Fryns, and K. Devriendt Chromosomal Anomalies in Individuals with Autism: A Strategy towards the Identification of Genes Involved in Autism Autism, June 1, 2004; 8(2): 141 - 161. [Abstract] [PDF] |
||||
![]() |
S.-H. Kim, X. Ma, S. Weremowicz, T. Ercolino, C. Powers, W. Mlynarski, K. A. Bashan, J. H. Warram, J. Mychaleckyj, S. S. Rich, et al. Identification of a Locus for Maturity-Onset Diabetes of the Young on Chromosome 8p23 Diabetes, May 1, 2004; 53(5): 1375 - 1384. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. T. Dermitzakis, E. Kirkness, S. Schwarz, E. Birney, A. Reymond, and S. E. Antonarakis Comparison of Human Chromosome 21 Conserved Nongenic Sequences (CNGs) With the Mouse and Dog Genomes Shows That Their Selective Constraint Is Independent of Their Genic Environment Genome Res., May 1, 2004; 14(5): 852 - 859. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. A. Kondrashov, A. Y. Ogurtsov, and A. S. Kondrashov Bioinformatical assay of human gene morbidity Nucleic Acids Res., March 12, 2004; 32(5): 1731 - 1737. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. A. Bickmore and S. M. van der Maarel Perturbations of chromatin structure in human genetic disease: recent advances Hum. Mol. Genet., October 15, 2003; 12(90002): R207 - 213. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. A. Lettice, S. J.H. Heaney, L. A. Purdie, L. Li, P. de Beer, B. A. Oostra, D. Goode, G. Elgar, R. E. Hill, and E. de Graaff A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly Hum. Mol. Genet., July 15, 2003; 12(14): 1725 - 1735. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. G. M. Frints, P. Marynen, D. Hartmann, J.-P. Fryns, J. Steyaert, M. Schachner, B. Rolf, K. Craessaerts, A. Snellinx, K. Hollanders, et al. CALL interrupted in a patient with non-specific mental retardation: gene dosage-dependent alteration of murine brain development and behavior Hum. Mol. Genet., July 1, 2003; 12(13): 1463 - 1474. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. W. State, J. M. Greally, A. Cuker, P. N. Bowers, O. Henegariu, T. M. Morgan, M. Gunel, M. DiLuna, R. A. King, C. Nelson, et al. Epigenetic abnormalities associated with a chromosome 18(q21-q22) inversion and a Gilles de la Tourette syndrome phenotype PNAS, April 15, 2003; 100(8): 4684 - 4689. [Abstract] [Full Text] [PDF] |
||||
![]() |
J J Cox, S T Holden, S Dee, J I Burbridge, and F L Raymond Identification of a 650 kb duplication at the X chromosome breakpoint in a patient with 46,X,t(X;8)(q28;q12) and non-syndromic mental retardation J. Med. Genet., March 1, 2003; 40(3): 169 - 174. [Abstract] [Full Text] [PDF] |
||||
![]() |
V S Vervoort, D Viljoen, R Smart, G Suthers, B R DuPont, A Abbott, and C E Schwartz Sorting nexin 3 (SNX3) is disrupted in a patient with a translocation t(6;13)(q21;q12) and microcephaly, microphthalmia, ectrodactyly, prognathism (MMEP) phenotype J. Med. Genet., December 1, 2002; 39(12): 893 - 899. [Abstract] [Full Text] [PDF] |
||||
![]() |
H Sugawara, M Egashira, N Harada, T C Jakobs, K Yoshiura, T Kishino, T Ohta, N Niikawa, and N Matsumoto Breakpoint analysis of a familial balanced translocation t(2;8)(q31;p21) associated with mesomelic dysplasia J. Med. Genet., July 1, 2002; 39(7): e34 - 34. [Full Text] [PDF] |
||||
![]() |
V. S. Vervoort, M. A. Beachem, P. S. Edwards, S. Ladd, K. E. Miller, X. de Mollerat, K. Clarkson, B. DuPont, C. E. Schwartz, R. E. Stevenson, et al. AGTR2 Mutations in X-Linked Mental Retardation Science, June 28, 2002; 296(5577): 2401 - 2403. [Abstract] [Full Text] [PDF] |
||||
![]() |
A H Nemeth, I W Gallen, M Crocker, E Levy, and E Maher Klinefelter-like phenotype and primary infertility in a male with a paracentric Xq inversion J. Med. Genet., June 1, 2002; 39(6): e28 - 28. [Full Text] [PDF] |
||||
![]() |
V. van Heyningen and K. A. Williamson PAX6 in sensory development Hum. Mol. Genet., May 15, 2002; 11(10): 1161 - 1167. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Bodmer, M. Eleveld, E. Kater-Baats, I. Janssen, B. Janssen, M. Weterman, E. Schoenmakers, M. Nickerson, M. Linehan, B. Zbar, et al. Disruption of a novel MFS transporter gene, DIRC2, by a familial renal cell carcinoma-associated t(2;3)(q35;q21) Hum. Mol. Genet., March 1, 2002; 11(6): 641 - 649. [Abstract] [Full Text] [PDF] |
||||
![]() |
W Balemans, N Patel, M Ebeling, E Van Hul, W Wuyts, C Lacza, M Dioszegi, F G Dikkers, P Hildering, P J Willems, et al. Identification of a 52 kb deletion downstream of the SOST gene in patients with van Buchem disease J. Med. Genet., February 1, 2002; 39(2): 91 - 97. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. G. Gallagher, D. E. Sabatino, D. S. Basseres, D. M. Nilson, C. Wong, A. P. Cline, L. J. Garrett, and D. M. Bodine Erythrocyte Ankyrin Promoter Mutations Associated with Recessive Hereditary Spherocytosis Cause Significant Abnormalities in Ankyrin Expression J. Biol. Chem., November 2, 2001; 276(45): 41683 - 41689. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. A. Kleinjan, A. Seawright, A. Schedl, R. A Quinlan, S. Danes, and V. van Heyningen Aniridia-associated translocations, DNase hypersensitivity, sequence comparison and transgenic analysis redefine the functional domain of PAX6 Hum. Mol. Genet., September 1, 2001; 10(19): 2049 - 2059. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. De Baere, M. J. Dixon, K. W. Small, E. W. Jabs, B. P. Leroy, K. Devriendt, Y. Gillerot, G. Mortier, F. Meire, L. Van Maldergem, et al. Spectrum of FOXL2 gene mutations in blepharophimosis-ptosis-epicanthus inversus (BPES) families demonstrates a genotype-phenotype correlation Hum. Mol. Genet., July 1, 2001; 10(15): 1591 - 1600. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. Balemans, M. Ebeling, N. Patel, E. Van Hul, P. Olson, M. Dioszegi, C. Lacza, W. Wuyts, J. Van Den Ende, P. Willems, et al. Increased bone density in sclerosteosis is due to the deficiency of a novel secreted protein (SOST) Hum. Mol. Genet., March 1, 2001; 10(5): 537 - 543. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. D. Lauderdale, J. S. Wilensky, E. R. Oliver, D. S. Walton, and T. Glaser 3' deletions cause aniridia by preventing PAX6 gene expression PNAS, November 16, 2000; (2000) 240398797. [Abstract] [Full Text] |
||||
![]() |
R. S. Hansen, R. Stoger, C. Wijmenga, A. M. Stanek, T. K. Canfield, P. Luo, M. R. Matarazzo, M. D'Esposito, R. Feil, G. Gimelli, et al. Escape from gene silencing in ICF syndrome: evidence for advanced replication time as a major determinant Hum. Mol. Genet., November 1, 2000; 9(18): 2575 - 2587. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Conforti, A. Tarlton, T. G. A. Mack, W. Mi, E. A. Buckmaster, D. Wagner, V. H. Perry, and M. P. Coleman A Ufd2/D4Cole1e chimeric protein and overexpression of Rbp7 in the slow Wallerian degeneration (WldS) mouse PNAS, October 10, 2000; 97(21): 11377 - 11382. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. S. Lechner, G. E. Begg, D. W. Speicher, and F. J. Rauscher III Molecular Determinants for Targeting Heterochromatin Protein 1-Mediated Gene Silencing: Direct Chromoshadow Domain-KAP-1 Corepressor Interaction Is Essential Mol. Cell. Biol., September 1, 2000; 20(17): 6449 - 6465. [Abstract] [Full Text] |
||||
![]() |
J. Guy, C. Spalluto, A. McMurray, T. Hearn, M. Crosier, L. Viggiano, V. Miolla, N. Archidiacono, M. Rocchi, C. Scott, et al. Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10q Hum. Mol. Genet., August 12, 2000; 9(13): 2029 - 2042. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. M. Barbour, C. Tufarelli, J. A. Sharpe, Z. E. Smith, H. Ayyub, C. A. Heinlein, J. Sloane-Stanley, K. Indrak, W. G. Wood, and D. R. Higgs alpha -Thalassemia resulting from a negative chromosomal position effect Blood, August 1, 2000; 96(3): 800 - 807. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Phippard, Y. Boyd, V. Reed, G. Fisher, W. K. Masson, E. P. Evans, J. C. Saunders, and E. B. Crenshaw III The sex-linked fidget mutation abolishes Brn4/Pou3f4 gene expression in the embryonic inner ear Hum. Mol. Genet., January 1, 2000; 9(1): 79 - 85. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Marahrens X-inactivation by chromosomal pairing events Genes & Dev., October 15, 1999; 13(20): 2624 - 2632. [Full Text] |
||||
![]() |
L. Villard, S. Briault, A.-M. Lossi, C. Paringaux, J. Belougne, L. Colleaux, D R Pincus, E Woollatt, J. Lespinasse, A. Munnich, et al. Two unrelated patients with inversions of the X chromosome and non-specific mental retardation: physical and transcriptional mapping of their common breakpoint region in Xq13.1 J. Med. Genet., October 1, 1999; 36(10): 754 - 758. [Abstract] [Full Text] |
||||
![]() |
J. D. Lauderdale, J. S. Wilensky, E. R. Oliver, D. S. Walton, and T. Glaser 3' deletions cause aniridia by preventing PAX6 gene expression PNAS, December 5, 2000; 97(25): 13755 - 13759. [Abstract] [Full Text] [PDF] |
||||
















