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Human Molecular Genetics Advance Access published online on June 8, 2005

Human Molecular Genetics, doi:10.1093/hmg/ddi205
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© The Author 2005. Published by Oxford University Press. All rights reserved
Received March 21, 2005
Revised May 12, 2005
Accepted May 24, 2005

Article

Diverse small-molecule modulators of SMN expression found by high-throughput compound screening: Early leads towards a therapeutic for Spinal Muscular Atrophy

Jill Jarecki 1*, Xiaocun Chen 2, Alexandra Bernardino 2, Daniel D. Coovert 3, Michael Whitney 2, Arthur Burghes 4, Jeffrey Stack 2, and Brian A. Pollok 2

1 Vertex Pharmaceuticals, Inc. 11010 Torreyana Road, San Diego, CA 92121; Families of SMA, Libertyville, IL 60048
2 Vertex Pharmaceuticals, Inc. 11010 Torreyana Road, San Diego, CA 92121
3 Department of Molecular and Cellular Biology, Ohio State University, Columbus, OH 43210
4 Department of Molecular Genetics, College of Biological Sciences, Ohio State University, Columbus, OH 43210; Department of Neurology, College of Medicine, Ohio State University, Columbus, OH 43210; Department of Molecular and Cellular Biology, Ohio State University, Columbus, OH 43210

* To whom correspondence should be addressed.
Jill Jarecki, E-mail: jill{at}fsma.org


   Abstract

We have exploited the existence of a second copy of the human SMN gene (SMN2) to develop a high throughput screening (HTS) strategy to identify potential small molecule therapeutics for the genetic disease Spinal Muscular Atrophy (SMA), which is caused by the loss of the SMN1 gene. Our screening process was designed to identify synthetic compounds that increase the total amount of full-length SMN messenger RNA and protein arising from the SMN2 gene, thereby suppressing the deleterious effects of losing SMN1. A cell-based bioassay was generated that detects SMN2 promoter activity, on which greater than 550,000 compounds were tested. This resulted in the identification of 17 distinct compounds with confirmed biological activity on the cellular primary assay, belonging to nine different structural families. Six of the nine scaffolds were chosen on the basis of their drug-like features to be tested for their ability to modulate SMN gene expression in SMA patient-derived fibroblasts. Five of the six compound classes altered SMN mRNA levels or mRNA splicing patterns in SMA patient-derived fibroblasts. Two of the compound classes, a quinazoline compound series and an indole compound, also increased SMN protein levels and nuclear gem/Cajal Body numbers in patient-derived cells. In addition, these two distinct scaffolds showed additive effects when used in combination, suggesting that they may act on different molecular targets. The work described here has provided the foundation for a successful medicinal chemistry effort to further advance these compounds as potential small molecule therapeutics for SMA.


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